Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30932
         (776 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    25   0.89 
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    23   3.6  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    21   8.3  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 400  KKKSVTVVSGLSTFDIDLKVAAKFFGTKF 486
            +KK V  + G+  FDI LK    +   KF
Sbjct: 1180 RKKIVKFLDGIMAFDIQLKQVVNYKKKKF 1208


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
 Frame = +2

Query: 119 GPREGVTYPIKVQYCGN---CSMPI--EYCEY 199
           G  EG  YP +  YC N    + PI  E+C++
Sbjct: 70  GVTEGCDYPWRSNYCDNKQQANPPISTEHCDW 101



 Score = 21.8 bits (44), Expect = 6.3
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +3

Query: 495 IFSHRDDEIVIQGDVKDDLFDIIPEKWPEIDEDSIEDLGDPK 620
           +F  R    V+      D+   IP   PE D+DS     +PK
Sbjct: 191 VFDRRSLRCVVPPTEDCDVPSTIPPPPPEEDDDSNIPQNNPK 232


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 470 NFAATFRSISKVL 432
           NF ATFR+I+ ++
Sbjct: 75  NFVATFRTIANII 87


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,280
Number of Sequences: 336
Number of extensions: 3307
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)