Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30932
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce...    44   2e-05
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    26   6.9  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   9.2  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   9.2  

>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 190

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +2

Query: 152 VQYCGNCSMPIEYCEYYPEYDKCKQWLEKNLP 247
           V YC  C++P+EYCE+     KCK+WL+ + P
Sbjct: 12  VLYCDVCTLPVEYCEFEGTLKKCKEWLKSSHP 43



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 22/46 (47%), Positives = 27/46 (58%)
 Frame = +1

Query: 373 VQVSRAPRGKKKSVTVVSGLSTFDIDLKVAAKFFGTKFACGSSVTE 510
           V +    R K+K VT V GL  F I+ K AAK    KFA G+SVT+
Sbjct: 99  VLIKTIERTKRKRVTTVQGLDAFGIETKKAAKMLANKFATGASVTK 144



 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 19/38 (50%), Positives = 28/38 (73%)
 Frame = +3

Query: 507 RDDEIVIQGDVKDDLFDIIPEKWPEIDEDSIEDLGDPK 620
           + DEIV+QGD+  D+FD I EK+ E+ ED+I+ + D K
Sbjct: 148 KKDEIVVQGDLNYDIFDFILEKFKEVPEDNIKIVEDTK 185


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 452 RSISKVLNPDTTVTDFFLPRGARDTCTNLGTSSFFLDFN 336
           RS  +V+NP+ +VTD   P G  +     G SSF    N
Sbjct: 223 RSRKRVVNPECSVTD--TPYGKLNNVIGEGASSFIRVIN 259


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -1

Query: 590  FINFWPLFRYDIKKIIFNITLN 525
            F+NF PLFR    K+I+N+ LN
Sbjct: 965  FVNFVPLFR----KVIWNLLLN 982


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 607 LVIQKGSVPYTKRRFTPG*YFISLYNVKNCHFQN 708
           L IQKGS P  ++      +F S ++V N H Q+
Sbjct: 52  LKIQKGSFPAIRQPTESSTHFQSSHSVSNAHNQS 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,783,846
Number of Sequences: 5004
Number of extensions: 54261
Number of successful extensions: 164
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)