Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30932
(776 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0671 - 5137787-5137843,5138420-5138503,5138595-5138662,513... 57 2e-08
09_06_0257 + 21891523-21891578,21891911-21892421,21893021-218930... 30 1.8
10_08_0339 + 16922509-16923876,16923941-16924384,16924469-169246... 30 2.4
02_04_0233 - 21135743-21135867,21135970-21136340,21136486-211367... 29 3.1
11_06_0180 + 20962420-20962528,20962618-20962699,20962831-209629... 29 5.4
11_06_0155 - 20712601-20713553,20713618-20714000,20714240-207142... 29 5.4
02_02_0597 - 11996350-11996483,11997511-11997604,11997877-119980... 29 5.4
04_04_1693 + 35404336-35404515,35405732-35406019,35406189-354062... 28 9.5
02_02_0516 + 11116746-11116998,11117547-11117671,11118363-111188... 28 9.5
>01_01_0671 -
5137787-5137843,5138420-5138503,5138595-5138662,
5138854-5138935,5139282-5139346,5139504-5139747
Length = 199
Score = 56.8 bits (131), Expect = 2e-08
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = +2
Query: 143 PIKVQYCGNCSMPIEYCEYYPEYDKCKQWLEKNLP 247
P++V YCG C +P EYCE+ P++++CK WL N P
Sbjct: 8 PVRVLYCGVCGLPAEYCEFGPDFERCKPWLRANAP 42
Score = 45.6 bits (103), Expect = 4e-05
Identities = 24/54 (44%), Positives = 34/54 (62%)
Frame = +1
Query: 349 KKEDVPKLVQVSRAPRGKKKSVTVVSGLSTFDIDLKVAAKFFGTKFACGSSVTE 510
KK+D ++V + + R K+K VTVV GL F + L A+K G KFA G+SV +
Sbjct: 101 KKKDKQEVV-IEKIVRNKRKCVTVVKGLELFGVKLSDASKKLGKKFATGASVVK 153
Score = 33.1 bits (72), Expect = 0.25
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +3
Query: 513 DEIVIQGDVKDDLFDIIPEKWPEIDEDSIEDLGDPKR 623
++I +QGD+ D+ + I + WP++ E +I + D ++
Sbjct: 159 EQIDVQGDISYDIVEFITDTWPDVPESAIFFIEDGRK 195
>09_06_0257 +
21891523-21891578,21891911-21892421,21893021-21893092,
21893571-21893875,21894085-21894196,21894514-21894750,
21894933-21895640
Length = 666
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +1
Query: 589 KTVLKILVIQKGSVPYTKRRFTPG*YFISLYN---VKNCHFQN*LVLPFYFLDL 741
KT KI VI +G++P+ +R PG + ++N + +C F + FY+L L
Sbjct: 49 KTTEKIKVISEGNIPWHRRILDPGSSMVLMWNRVFLGSCLFALFIDPFFYYLPL 102
>10_08_0339 +
16922509-16923876,16923941-16924384,16924469-16924655,
16924750-16925702
Length = 983
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 495 IFSHRDDEIVIQGDVKDDLFDIIPEKWPEI 584
IF HRD +V+ D D+L D+I + WP +
Sbjct: 291 IFDHRDCTVVL--DEVDELLDLIRKTWPTL 318
>02_04_0233 -
21135743-21135867,21135970-21136340,21136486-21136757,
21137289-21137397,21137846-21138247,21138376-21138419,
21138539-21138759,21140163-21140274,21140620-21140754
Length = 596
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 367 KLVQVSRAPRGKKKSVTVVSGLSTFDIDLKVAAKFFGTKFACGSSVTEM 513
+ +Q+ R K +T +SGL F +D A KFAC ++ E+
Sbjct: 506 RTIQIMTERRQGNKKMTRLSGLECFLMDPDSLASELQKKFACSTTTAEL 554
>11_06_0180 +
20962420-20962528,20962618-20962699,20962831-20962948,
20963024-20963062,20963181-20963343,20963706-20963921,
20964039-20964116,20964244-20964500,20964544-20964575,
20964815-20965197,20965262-20965831,20966250-20966343,
20966365-20966541,20966761-20966963,20968244-20968301,
20969126-20969381,20969553-20969789
Length = 1023
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 188 YCEYYPEYDKCKQWLEKNLPTESRK 262
+ E PEY++ K+WLE++LP K
Sbjct: 740 WLEASPEYEQEKRWLEQDLPVSCGK 764
>11_06_0155 -
20712601-20713553,20713618-20714000,20714240-20714271,
20714315-20714571,20714699-20714724,20714894-20715081,
20715302-20715595,20715714-20715752,20715827-20715944,
20716076-20716157,20716610-20716668,20717156-20717221,
20717358-20717447,20718142-20718236
Length = 893
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 188 YCEYYPEYDKCKQWLEKNLPTESRK 262
+ E PEY++ K+WLE++LP K
Sbjct: 839 WLEASPEYEQEKRWLEQDLPVSCGK 863
>02_02_0597 -
11996350-11996483,11997511-11997604,11997877-11998032,
11998580-11998639,11998733-11998951,11999038-11999377,
12001240-12001571
Length = 444
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 552 FDIIPEKWPEIDEDSIEDLGD 614
FD+IPEK EID +S+E + D
Sbjct: 178 FDLIPEKGWEIDLNSLESIAD 198
>04_04_1693 +
35404336-35404515,35405732-35406019,35406189-35406278,
35406487-35406564,35406638-35406718,35407300-35407350,
35407788-35407933,35408169-35408235,35408328-35408387,
35408472-35408501,35408776-35408835,35408936-35409052,
35409790-35409903,35410068-35410166,35410572-35410697,
35410774-35410848,35410958-35411029,35411167-35411277,
35411760-35411843,35413149-35413256,35414207-35414308,
35414393-35414455,35414524-35414598,35414901-35414972,
35415063-35415187,35415251-35415302,35415380-35415448,
35415525-35415540,35415941-35415989,35416607-35417180
Length = 1077
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +3
Query: 513 DEIVIQGDVKDDLFDIIPEKWPEIDEDSIEDLGDPKR*CPLH 638
+ +V Q ++D L ++ ++ + ++ LGD R CP+H
Sbjct: 677 ESLVSQSSLRDILLQCCMDEAADVRQSALALLGDLSRVCPIH 718
>02_02_0516 +
11116746-11116998,11117547-11117671,11118363-11118855,
11118996-11119201
Length = 358
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/75 (20%), Positives = 35/75 (46%)
Frame = -1
Query: 590 FINFWPLFRYDIKKIIFNITLNYYLIISVTEDPQANFVPKNFAATFRSISKVLNPDTTVT 411
F N + + + K + F ++ YL ++ + + NF N+A+ I ++N + T+
Sbjct: 74 FSNGYNMADFIAKDMGFKMSPPAYLSLNSSIKMETNFTGVNYASAGAGIQIIMNDEATIP 133
Query: 410 DFFLPRGARDTCTNL 366
+ + DT + +
Sbjct: 134 FVYQVKNFNDTVSQM 148
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,568,165
Number of Sequences: 37544
Number of extensions: 306187
Number of successful extensions: 738
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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