Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30932
         (776 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47826| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   5e-05
SB_25796| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_43816| Best HMM Match : DUF755 (HMM E-Value=6.3)                    30   1.8  
SB_40797| Best HMM Match : HEAT (HMM E-Value=5.5e-05)                  29   4.2  
SB_14977| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23)           28   9.7  

>SB_47826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 18/24 (75%), Positives = 21/24 (87%)
 Frame = +3

Query: 510 DDEIVIQGDVKDDLFDIIPEKWPE 581
           DD+I IQGDV DDL+D IP+KWPE
Sbjct: 56  DDKIEIQGDVTDDLWDFIPDKWPE 79



 Score = 32.7 bits (71), Expect = 0.34
 Identities = 13/22 (59%), Positives = 18/22 (81%)
 Frame = +1

Query: 442 DIDLKVAAKFFGTKFACGSSVT 507
           +IDLK A+K F  +F+CG+SVT
Sbjct: 33  EIDLKKASKAFANRFSCGASVT 54


>SB_25796| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 510 DDEIVIQGDVKDDLFDIIPEKWPEIDEDSIEDLGD 614
           D ++V+  DV DD  D++ +   ++D+D I+D  D
Sbjct: 20  DVDVVVDDDVDDDDDDVVDDDNDDVDDDDIDDDDD 54


>SB_43816| Best HMM Match : DUF755 (HMM E-Value=6.3)
          Length = 539

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -1

Query: 539 NITLNYYLIISVTEDPQANFV-PKNFAATFRSIS--KVLNPD 423
           +++ NY   ISVTE P+  FV P+   A  RSI   K L PD
Sbjct: 376 HLSTNYVDAISVTEIPEDLFVTPREATAALRSIKLRKALGPD 417


>SB_40797| Best HMM Match : HEAT (HMM E-Value=5.5e-05)
          Length = 83

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 513 DEIVIQGDVKDDLFDIIPEKWPEIDEDSIEDLGDPKR*CPLH*K 644
           ++ VI+ ++   LF  + +K PE+ + S   LGD  + C  H K
Sbjct: 36  EQFVIRSNIMTLLFQCMQDKMPEVRQSSFALLGDLTKACFQHVK 79


>SB_14977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -1

Query: 560 DIKKIIFNITLNYYLIISVTEDPQANFVPKNFAATFRSISKVLN 429
           DIK + F +TL    I     DP   +  K+  A F  IS V +
Sbjct: 38  DIKDVPFEVTLRNVTIFEAMFDPSRGYTGKSSEAFFSWISSVFD 81


>SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23)
          Length = 1531

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -1

Query: 509  SVTEDPQANFVPKNFAATFRSISKVLNPDTTVTDFFLPRGARDTCTNL 366
            S T DP  + +    A+   S    +NP T V  +++  G+R +C ++
Sbjct: 1021 SNTSDPSGSLIYNTDASHSASYLPGVNPSTGVVWYWMREGSRKSCNDI 1068


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,400,267
Number of Sequences: 59808
Number of extensions: 365345
Number of successful extensions: 997
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)