Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30932
         (776 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117202-17|CAB55081.1|  192|Caenorhabditis elegans Hypothetical...    74   1e-13
Z37092-11|CAA85461.2|  334|Caenorhabditis elegans Hypothetical p...    28   8.6  

>AL117202-17|CAB55081.1|  192|Caenorhabditis elegans Hypothetical
           protein Y47D3A.21 protein.
          Length = 192

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 37/54 (68%), Positives = 42/54 (77%)
 Frame = +1

Query: 346 KKKEDVPKLVQVSRAPRGKKKSVTVVSGLSTFDIDLKVAAKFFGTKFACGSSVT 507
           KKK   P+ V + R PRGKK SVTV+ GL+TFDIDLKVA+K F  KFACGSSVT
Sbjct: 101 KKKGGGPQKVTLQREPRGKK-SVTVIKGLATFDIDLKVASKLFAQKFACGSSVT 153



 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 24/48 (50%), Positives = 34/48 (70%)
 Frame = +2

Query: 104 RDLSMGPREGVTYPIKVQYCGNCSMPIEYCEYYPEYDKCKQWLEKNLP 247
           + L+ GP +GV+YP+K+ YCG CSMP EYC+Y  + D C+ W  +N P
Sbjct: 10  QSLAPGPIDGVSYPLKMVYCGQCSMPPEYCDYSGQTDVCRAWATQNAP 57



 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 26/37 (70%), Positives = 32/37 (86%)
 Frame = +3

Query: 513 DEIVIQGDVKDDLFDIIPEKWPEIDEDSIEDLGDPKR 623
           DEIVIQGDVKDDL D+IPEKW ++ ++ I+DLGD KR
Sbjct: 156 DEIVIQGDVKDDLLDLIPEKWKQVTDEQIDDLGDKKR 192


>Z37092-11|CAA85461.2|  334|Caenorhabditis elegans Hypothetical
           protein F44F4.13 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = -1

Query: 614 ITKIFNTVFINFWPLFRY--DIKKIIFNITLNYYLI-ISVTEDPQANFVP 474
           I +IF T+F   WP  +Y   +   I  I  NY  + I    DP   +VP
Sbjct: 126 IDRIFATIFPKLWPKLKYWPGVVLSILMIACNYANVQIIFWGDPLTEYVP 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,069,497
Number of Sequences: 27780
Number of extensions: 291565
Number of successful extensions: 813
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)