Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30932
         (776 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11900.1 68418.m01392 eukaryotic translation initiation facto...    58   6e-09
At1g71350.1 68414.m08235 eukaryotic translation initiation facto...    35   0.069
At1g76450.1 68414.m08891 oxygen-evolving complex-related SP:Q9S7...    29   2.6  
At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28 ...    29   3.4  
At5g10560.1 68418.m01222 glycosyl hydrolase family 3 protein bet...    28   7.9  

>At5g11900.1 68418.m01392 eukaryotic translation initiation factor
           SUI1 family protein similar to SP|O43583
           Density-regulated protein (DRP1 protein) (Smooth muscle
           cell associated protein-3) {Homo sapiens}; contains Pfam
           profile PF01253: Translation initiation factor SUI1
          Length = 198

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 20/35 (57%), Positives = 27/35 (77%)
 Frame = +2

Query: 143 PIKVQYCGNCSMPIEYCEYYPEYDKCKQWLEKNLP 247
           P+KV YCG CS+P EYCE+ P++ +CK WL +N P
Sbjct: 7   PVKVLYCGVCSLPAEYCEFGPDFARCKPWLVENAP 41



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 22/54 (40%), Positives = 34/54 (62%)
 Frame = +1

Query: 349 KKEDVPKLVQVSRAPRGKKKSVTVVSGLSTFDIDLKVAAKFFGTKFACGSSVTE 510
           KK+D  +++ + +  R K+K +T+V GL  F I L  A+K  G KFA G+SV +
Sbjct: 100 KKKDRQEVI-IEKVVRNKRKCITIVKGLELFGIKLSDASKKLGKKFATGASVVK 152



 Score = 33.5 bits (73), Expect = 0.16
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +3

Query: 513 DEIVIQGDVKDDLFDIIPEKWPEIDEDSIEDLGDPKR 623
           ++I +QGD+  D+ + I + WP++ E SI  + D K+
Sbjct: 158 EQIDVQGDIIYDIVEFITDTWPDVPERSIFFIEDGKK 194


>At1g71350.1 68414.m08235 eukaryotic translation initiation factor
           SUI1 family protein weak similarity to SP|P41214 Ligatin
           (Hepatocellular carcinoma-associated antigen 56) {Homo
           sapiens}; contains Pfam profile PF01253: Translation
           initiation factor SUI1
          Length = 597

 Score = 34.7 bits (76), Expect = 0.069
 Identities = 20/49 (40%), Positives = 25/49 (51%)
 Frame = +1

Query: 367 KLVQVSRAPRGKKKSVTVVSGLSTFDIDLKVAAKFFGTKFACGSSVTEM 513
           K VQ+    R   K VT V+G+ TF ID          KFAC +SV E+
Sbjct: 508 KPVQIMTERRQGNKKVTKVTGMETFLIDPDSFGSELQKKFACSTSVGEL 556


>At1g76450.1 68414.m08891 oxygen-evolving complex-related SP:Q9S720;
           contains a PsbP domain
          Length = 247

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 309 TPEAWWQGYVKIQEERRCSQISAGISCSSGQEEISH 416
           +P+++    V I + RRCS ISA IS      E  H
Sbjct: 10  SPQSFSNPRVTITDSRRCSSISAAISVLDSSNEEQH 45


>At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28
            (Swiss-Prot:Q9H583) [Homo sapiens]
          Length = 1830

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = -3

Query: 693  IFNIIKRNKVLPWCKSSFSVGDTTFLDHQDLQYCLHQFLATFQ 565
            +F +++R+    W K +FS+ +T+    QD++     F+++ Q
Sbjct: 1069 LFKLLQRSMSKEWVKIAFSIEETSLQPPQDVRETTPTFISSIQ 1111


>At5g10560.1 68418.m01222 glycosyl hydrolase family 3 protein
           beta-xylosidase, Aspergllus nidulans, EMBL:ANXLND
          Length = 792

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 324 WQGYVKIQEERRCSQISAGISCSSGQEEISHSRVWIE 434
           +QGY K  EE     I AG+  + G   + H++  IE
Sbjct: 319 YQGYTKSPEEAVADAIKAGVDINCGTYMLRHTQSAIE 355


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,078,634
Number of Sequences: 28952
Number of extensions: 270283
Number of successful extensions: 793
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)