Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30930
(744 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M22404-1|AAA36333.1| 167|Homo sapiens protein ( Human intestina... 36 0.20
AL355338-1|CAH70366.2| 663|Homo sapiens Zic family member 5 (od... 35 0.27
AF378304-1|AAK55418.1| 639|Homo sapiens zinc family member 5 pr... 35 0.27
M57417-1|AAA63229.2| 294|Homo sapiens mucin protein. 34 0.47
AJ298317-1|CAC83674.1| 2448|Homo sapiens mucin 5 protein. 34 0.62
M94131-1|AAA59163.1| 1270|Homo sapiens mucin protein. 31 4.4
M74027-1|AAA59875.1| 573|Homo sapiens mucin protein. 31 4.4
L21998-1|AAB95295.1| 5179|Homo sapiens mucin protein. 31 4.4
AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein. 31 4.4
L46721-1|AAC41774.1| 164|Homo sapiens mucin protein. 31 5.8
BT009908-1|AAP88910.1| 330|Homo sapiens homeo box C13 protein. 30 7.6
BC090850-1|AAH90850.1| 330|Homo sapiens homeobox C13 protein. 30 7.6
BC002754-1|AAH02754.1| 330|Homo sapiens HOXC13 protein protein. 30 7.6
AK024027-1|BAB14786.1| 146|Homo sapiens protein ( Homo sapiens ... 30 7.6
AJ438986-1|CAD27941.1| 330|Homo sapiens hypothetical protein pr... 30 7.6
AF263466-1|AAF73439.1| 330|Homo sapiens HOXC13 protein. 30 7.6
AF255676-1|AAF67760.1| 330|Homo sapiens homeoprotein C13 protein. 30 7.6
>M22404-1|AAA36333.1| 167|Homo sapiens protein ( Human intestinal
mucin mRNA, partial cds, clone SMUC 40. ).
Length = 167
Score = 35.5 bits (78), Expect = 0.20
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +3
Query: 207 PTPHPLTRTTQGIPTGRCVFPKYRPSRYPS*ANSP*ATTRTASLLCTGTPSRTYSP*SCD 386
PTP P+T TT PT P ++ P +P T T ++ T TP+ T +P S
Sbjct: 95 PTPTPITTTTTVTPT-----PTPTGTQTP----TPTPITTTTTVTPTPTPTGTQTPTSTP 145
Query: 387 RCSNTP-RPSSSCTGTPYST 443
+NT P+ + TGTP +T
Sbjct: 146 ITTNTTVTPTPTPTGTPSTT 165
>AL355338-1|CAH70366.2| 663|Homo sapiens Zic family member 5
(odd-paired homolog, Drosophila) protein.
Length = 663
Score = 35.1 bits (77), Expect = 0.27
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +3
Query: 180 LRLSMKLMKPTPHPLTRTTQGIPTGRCVFPKYRPSRYPS*ANSP*ATTRTASLLC--TGT 353
+++ K P+P PL ++ G P G + P P+R S SP T +C +G
Sbjct: 572 MKIHCKSPPPSPGPLGYSSVGTPVGAPLSPVLDPARSHSSTLSPQVTNLNEWYVCQASGA 631
Query: 354 PSRTYSP*SCDRCSNT 401
PS ++P S S T
Sbjct: 632 PSHLHTPSSNGTTSET 647
>AF378304-1|AAK55418.1| 639|Homo sapiens zinc family member 5
protein protein.
Length = 639
Score = 35.1 bits (77), Expect = 0.27
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +3
Query: 180 LRLSMKLMKPTPHPLTRTTQGIPTGRCVFPKYRPSRYPS*ANSP*ATTRTASLLC--TGT 353
+++ K P+P PL ++ G P G + P P+R S SP T +C +G
Sbjct: 548 MKIHCKSPPPSPGPLGYSSVGTPVGAPLSPVLDPARSHSSTLSPQVTNLNEWYVCQASGA 607
Query: 354 PSRTYSP*SCDRCSNT 401
PS ++P S S T
Sbjct: 608 PSHLHTPSSNGTTSET 623
>M57417-1|AAA63229.2| 294|Homo sapiens mucin protein.
Length = 294
Score = 34.3 bits (75), Expect = 0.47
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +3
Query: 207 PTPHPLTRTTQGIPTGRCVFPKYRPSRYPS*ANSP*ATTRTASLLCTGTPSRTYSP*SCD 386
PTP P+T TT PT P ++ P+ +P +TT T + T T ++T +P
Sbjct: 71 PTPTPITTTTTVTPT-----PTPTGTQTPT--TTPISTTTTVTPTPTPTGTQTLTPTPIT 123
Query: 387 RCSN-TPRPSSSCTGTPYST 443
+ TP P+ + T TP ST
Sbjct: 124 TTTTVTPTPTPTGTQTPTST 143
Score = 32.3 bits (70), Expect = 1.9
Identities = 26/79 (32%), Positives = 35/79 (44%)
Frame = +3
Query: 207 PTPHPLTRTTQGIPTGRCVFPKYRPSRYPS*ANSP*ATTRTASLLCTGTPSRTYSP*SCD 386
PTP P+T TT PT P S P+ + T T + TGT + T +P +
Sbjct: 186 PTPTPITTTTTVTPTPT---PTSTQSTTPTPITT--TNTVTPTPTPTGTQTPTPTPITTT 240
Query: 387 RCSNTPRPSSSCTGTPYST 443
TP P+ + T TP T
Sbjct: 241 TTMVTPTPTITSTQTPTPT 259
>AJ298317-1|CAC83674.1| 2448|Homo sapiens mucin 5 protein.
Length = 2448
Score = 33.9 bits (74), Expect = 0.62
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +3
Query: 210 TPHPLTRTTQGIPTGRCVFPKYRPSRYPS*ANSP*ATTRTASLLCTGTPSR-TYSP*SCD 386
T P TRTT P G P PS P+ + TT S T T S T S S
Sbjct: 2349 TSAPTTRTTSASPAGTTSGPGNTPSPVPTTSTISAPTTSITSAPTTSTTSAPTSSTTSGP 2408
Query: 387 RCSNTPRPSSSCTGTP 434
+ +P P++S T P
Sbjct: 2409 GTTPSPVPTTSITSAP 2424
>M94131-1|AAA59163.1| 1270|Homo sapiens mucin protein.
Length = 1270
Score = 31.1 bits (67), Expect = 4.4
Identities = 28/78 (35%), Positives = 34/78 (43%)
Frame = +3
Query: 210 TPHPLTRTTQGIPTGRCVFPKYRPSRYPS*ANSP*ATTRTASLLCTGTPSRTYSP*SCDR 389
TP P T TT P P P+ PS SP TT + TPS T +P S
Sbjct: 1031 TPSPPTTTTPSPPITTTTTPP--PTTTPS---SPITTTPSPPTTTMTTPSPTTTPSS--P 1083
Query: 390 CSNTPRPSSSCTGTPYST 443
+ T PSS+ T +P T
Sbjct: 1084 ITTTTTPSSTTTPSPPPT 1101
Score = 30.7 bits (66), Expect = 5.8
Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = +3
Query: 210 TPHPLTRTTQGIPTGRCVFPKYR-PSRYPS*ANSP*ATTRTASLLCTGTPSRTYSP*SCD 386
TP P T T PT P PS P+ +P TT T S T TPS +
Sbjct: 913 TPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTT-TPSPPTTTTPSPPTITTTTP 971
Query: 387 RCSNTPRPSSSCTGTPYST 443
+ TP P ++ T TP T
Sbjct: 972 PPTTTPSPPTTTTTTPPPT 990
>M74027-1|AAA59875.1| 573|Homo sapiens mucin protein.
Length = 573
Score = 31.1 bits (67), Expect = 4.4
Identities = 28/78 (35%), Positives = 34/78 (43%)
Frame = +3
Query: 210 TPHPLTRTTQGIPTGRCVFPKYRPSRYPS*ANSP*ATTRTASLLCTGTPSRTYSP*SCDR 389
TP P T TT P P P+ PS SP TT + TPS T +P S
Sbjct: 314 TPSPPTTTTPSPPITTTTTPP--PTTTPS---SPITTTPSPPTTTMTTPSPTTTPSS--P 366
Query: 390 CSNTPRPSSSCTGTPYST 443
+ T PSS+ T +P T
Sbjct: 367 ITTTTTPSSTTTPSPPPT 384
Score = 30.7 bits (66), Expect = 5.8
Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = +3
Query: 210 TPHPLTRTTQGIPTGRCVFPKYR-PSRYPS*ANSP*ATTRTASLLCTGTPSRTYSP*SCD 386
TP P T T PT P PS P+ +P TT T S T TPS +
Sbjct: 196 TPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTT-TPSPPTTTTPSPPTITTTTP 254
Query: 387 RCSNTPRPSSSCTGTPYST 443
+ TP P ++ T TP T
Sbjct: 255 PPTTTPSPPTTTTTTPPPT 273
>L21998-1|AAB95295.1| 5179|Homo sapiens mucin protein.
Length = 5179
Score = 31.1 bits (67), Expect = 4.4
Identities = 28/78 (35%), Positives = 34/78 (43%)
Frame = +3
Query: 210 TPHPLTRTTQGIPTGRCVFPKYRPSRYPS*ANSP*ATTRTASLLCTGTPSRTYSP*SCDR 389
TP P T TT P P P+ PS SP TT + TPS T +P S
Sbjct: 1656 TPSPPTTTTPSPPITTTTTPP--PTTTPS---SPITTTPSPPTTTMTTPSPTTTPSS--P 1708
Query: 390 CSNTPRPSSSCTGTPYST 443
+ T PSS+ T +P T
Sbjct: 1709 ITTTTTPSSTTTPSPPPT 1726
Score = 30.7 bits (66), Expect = 5.8
Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = +3
Query: 210 TPHPLTRTTQGIPTGRCVFPKYR-PSRYPS*ANSP*ATTRTASLLCTGTPSRTYSP*SCD 386
TP P T T PT P PS P+ +P TT T S T TPS +
Sbjct: 1538 TPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTT-TPSPPTTTTPSPPTITTTTP 1596
Query: 387 RCSNTPRPSSSCTGTPYST 443
+ TP P ++ T TP T
Sbjct: 1597 PPTTTPSPPTTTTTTPPPT 1615
>AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.
Length = 1349
Score = 31.1 bits (67), Expect = 4.4
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Frame = +3
Query: 210 TPHPLTRTTQGIPTGRCVFPKYRPSRYP--S*ANSP*ATT---RTASLLCTGTPSRTYSP 374
T P T TT T P+ S P S ++P ++T RT S++ T S T SP
Sbjct: 359 TSAPTTSTTSAPTTSTTSTPQTSISSAPTSSTTSAPTSSTISARTTSIISAPTTSTTSSP 418
Query: 375 *----SCDRCSNTPRPSSSCTGTPYST 443
S S T P+SS T TP ++
Sbjct: 419 TTSTTSATTTSTTSAPTSSTTSTPQTS 445
>L46721-1|AAC41774.1| 164|Homo sapiens mucin protein.
Length = 164
Score = 30.7 bits (66), Expect = 5.8
Identities = 25/79 (31%), Positives = 36/79 (45%)
Frame = +3
Query: 207 PTPHPLTRTTQGIPTGRCVFPKYRPSRYPS*ANSP*ATTRTASLLCTGTPSRTYSP*SCD 386
P+P P T TT T P + P+ ++P A T + +L T S T +P
Sbjct: 39 PSPVPTTSTTSAPTTSTTSAPTTSTTSAPT-TSTPSAPTTSTTL--APTTSTTSAP---- 91
Query: 387 RCSNTPRPSSSCTGTPYST 443
S T P+SS T TP ++
Sbjct: 92 TTSTTSTPTSSTTSTPQTS 110
>BT009908-1|AAP88910.1| 330|Homo sapiens homeo box C13 protein.
Length = 330
Score = 30.3 bits (65), Expect = 7.6
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +1
Query: 7 LCRNKQNVWKGFRNRHLSDSRLLSRTQSPRLHST 108
L + +W F+NR + + +++S++++P LHST
Sbjct: 299 LSERQVTIW--FQNRRVKEKKVVSKSKAPHLHST 330
>BC090850-1|AAH90850.1| 330|Homo sapiens homeobox C13 protein.
Length = 330
Score = 30.3 bits (65), Expect = 7.6
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +1
Query: 7 LCRNKQNVWKGFRNRHLSDSRLLSRTQSPRLHST 108
L + +W F+NR + + +++S++++P LHST
Sbjct: 299 LSERQVTIW--FQNRRVKEKKVVSKSKAPHLHST 330
>BC002754-1|AAH02754.1| 330|Homo sapiens HOXC13 protein protein.
Length = 330
Score = 30.3 bits (65), Expect = 7.6
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +1
Query: 7 LCRNKQNVWKGFRNRHLSDSRLLSRTQSPRLHST 108
L + +W F+NR + + +++S++++P LHST
Sbjct: 299 LSERQVTIW--FQNRRVKEKKVVSKSKAPHLHST 330
>AK024027-1|BAB14786.1| 146|Homo sapiens protein ( Homo sapiens
cDNA FLJ13965 fis, clone Y79AA1001391, moderately
similar to HOMEOBOX PROTEIN HOX-A13. ).
Length = 146
Score = 30.3 bits (65), Expect = 7.6
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +1
Query: 7 LCRNKQNVWKGFRNRHLSDSRLLSRTQSPRLHST 108
L + +W F+NR + + +++S++++P LHST
Sbjct: 115 LSERQVTIW--FQNRRVKEKKVVSKSKAPHLHST 146
>AJ438986-1|CAD27941.1| 330|Homo sapiens hypothetical protein
protein.
Length = 330
Score = 30.3 bits (65), Expect = 7.6
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +1
Query: 7 LCRNKQNVWKGFRNRHLSDSRLLSRTQSPRLHST 108
L + +W F+NR + + +++S++++P LHST
Sbjct: 299 LSERQVTIW--FQNRRVKEKKVVSKSKAPHLHST 330
>AF263466-1|AAF73439.1| 330|Homo sapiens HOXC13 protein.
Length = 330
Score = 30.3 bits (65), Expect = 7.6
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +1
Query: 7 LCRNKQNVWKGFRNRHLSDSRLLSRTQSPRLHST 108
L + +W F+NR + + +++S++++P LHST
Sbjct: 299 LSERQVTIW--FQNRRVKEKKVVSKSKAPHLHST 330
>AF255676-1|AAF67760.1| 330|Homo sapiens homeoprotein C13 protein.
Length = 330
Score = 30.3 bits (65), Expect = 7.6
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +1
Query: 7 LCRNKQNVWKGFRNRHLSDSRLLSRTQSPRLHST 108
L + +W F+NR + + +++S++++P LHST
Sbjct: 299 LSERQVTIW--FQNRRVKEKKVVSKSKAPHLHST 330
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,702,428
Number of Sequences: 237096
Number of extensions: 2272613
Number of successful extensions: 4848
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4837
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8903143626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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