Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30930
         (744 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20350.1 68415.m02376 AP2 domain-containing transcription fac...    31   0.61 
At2g01430.1 68415.m00066 homeobox-leucine zipper protein 17 (HB-...    30   1.9  
At5g24990.1 68418.m02961 expressed protein                             28   5.7  
At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein si...    28   7.5  

>At2g20350.1 68415.m02376 AP2 domain-containing transcription
           factor, putative pFAM domain (PF00847)
          Length = 158

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = -1

Query: 657 CPACVFNGTNGAVSPREDCILLSLHHHRGSR---AGTYCHRCGDLQFCIRKHIG 505
           CP C   G  G V PR + I+     H+G R   +G +     D    +R+ +G
Sbjct: 61  CPLCSVTGCYGCVFPRHEAIIKKEKKHKGVRKKPSGKWAAEIWDPSLKVRRWLG 114


>At2g01430.1 68415.m00066 homeobox-leucine zipper protein 17 (HB-17)
           / HD-ZIP transcription factor 17 identical to
           (GI:18857716) homeodomain-leucine zipper protein ATHB-17
           (GI:18857716) [Arabidopsis thaliana]
          Length = 275

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -1

Query: 444 LLNMVYRYMMNWGVVYWSSDHSFMDYRCVMVYRYK-VVRLFVWLLMVSL 301
           ++ +++ Y+  +    ++  H  MDY CV +Y+YK +V L V L  + L
Sbjct: 1   MIKLLFTYICTYTYKLYALYH--MDYACVCMYKYKGIVTLQVCLFYIKL 47


>At5g24990.1 68418.m02961 expressed protein
          Length = 294

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 696 PELITSSVETLIFCPACVFNGTNGAVSPREDCILLSLHHH 577
           PE IT ++    FC   +  GTNG  SP  +   L  H++
Sbjct: 26  PEWITETINGGSFCHVDLETGTNGWASPPGNVFSLRSHNY 65


>At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 720

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 77  QEHNHHGYTLQTLVKHDVPQKIKTH 151
           Q H HH    QT +++ +P++I +H
Sbjct: 676 QNHKHHEIQNQTAMENQIPEEITSH 700


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,910,074
Number of Sequences: 28952
Number of extensions: 304195
Number of successful extensions: 915
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)