Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30929
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    96   5e-21
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    29   0.51 
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    29   0.88 
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    27   2.7  
SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase Le...    26   4.7  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    26   6.2  

>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 95.9 bits (228), Expect = 5e-21
 Identities = 43/82 (52%), Positives = 59/82 (71%)
 Frame = +3

Query: 9   LAYWVAEDKDVPARVTLLEIPNRTEVRSKNLFSVADCKIHWQKSGDYLCVKVDRYSKVKK 188
           LAYW  E  + PARV L+ IP+++ +R+KNLF+V+DCK++WQ +GDYLCVKVDR++K KK
Sbjct: 373 LAYWTPEITNQPARVALISIPSKSTIRTKNLFNVSDCKLYWQSNGDYLCVKVDRHTKTKK 432

Query: 189 DKIDIKYSGMYYNFEIFHMREK 254
                     + N EIF +REK
Sbjct: 433 --------STFSNLEIFRIREK 446



 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 12/99 (12%)
 Frame = +2

Query: 251 KEIPVDSVEIKEPIQAFAWEPVGSKFSIIHG-----DPANI--SISFY----QVNTGQAP 397
           K IPV+ V++K+ +  FAWEP   +F+II       +  N+  ++SFY    + NT    
Sbjct: 446 KNIPVEVVDLKDVVLNFAWEPKSDRFAIISANDQVLNSTNVKTNLSFYGFEQKKNTPSTF 505

Query: 398 TLLKKFERKPFNHLFWSPSGQFIVLANLG-LTGGALEFW 511
             +  F++K  N LF +P G+F+V A LG  T   LEF+
Sbjct: 506 RHIITFDKKTCNSLFMAPKGRFMVAATLGSSTQYDLEFY 544



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +1

Query: 541 ADHYQMSGIEWDPTGRYVVTGVSSLKCKMGLRAINIWSFPGARILQGEVXEGK 699
           A+H+ M+ +EWDP+GRYV T  +  + K+      +  F G  + +  + E K
Sbjct: 567 AEHFGMTELEWDPSGRYVTTSSTIWRHKLE-NGYRLCDFRGTLLREEMIGEFK 618


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -3

Query: 391  LASIYLIEADTDVCWVTVNNREL*TNW---LPSKSLN 290
            LA  YL  A T+  W+ +NN  L T W   LPSK  N
Sbjct: 3945 LADSYLKLASTEPLWLFINNIHLSTPWAEKLPSKMSN 3981


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +2

Query: 362 ISFYQVNTGQAPTLLKKFERKPFNHLFWSPSGQFIVLA 475
           I FY  +TG    L++K + KP   ++W+  G+F++LA
Sbjct: 447 ICFYDWDTG---ILVRKIDVKP-KGVYWNDDGRFVILA 480


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 486 SPRLARTMNCPDGDQKRWLNGFLSNFLSNV 397
           SP L    N  D D + WL G+L+  L ++
Sbjct: 63  SPNLKGLDNTADSDSQPWLGGYLAGRLEDI 92


>SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase
           Leu1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 9   LAYWVAEDKDVPARVTLLEIPN 74
           LA W+AE  + PA VTLL+  N
Sbjct: 172 LAAWLAETSNPPAPVTLLDKAN 193


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 514 TNDFTIMNVADHYQMSGIEWDPTGRYVVTG 603
           T +F ++N +  Y +   EW   GR++++G
Sbjct: 112 TFNFELINQSHDYAVRCAEWSTDGRWLISG 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,239,666
Number of Sequences: 5004
Number of extensions: 72293
Number of successful extensions: 224
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)