Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30929
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0985 - 22042801-22042963,22043019-22043138,22043261-220435... 82 4e-16
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306... 36 0.032
02_01_0100 + 743467-744868,745066-745127 33 0.30
02_01_0098 + 717857-719252,719453-719511 29 2.8
07_01_0084 + 657846-658538,660652-661920 29 3.7
04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727 29 3.7
08_01_0058 + 388989-389102,389226-389337,389457-389483,389787-38... 29 4.9
01_06_0864 - 32546696-32546803,32546881-32546961,32547134-325472... 29 4.9
01_06_0503 + 29864421-29864550,29865143-29865215,29865486-298655... 29 4.9
08_02_0523 + 18150425-18150629,18150822-18150881,18150882-181509... 28 6.5
12_01_0160 - 1212295-1213586,1213828-1213976,1214288-1214445,121... 28 8.6
01_06_0646 - 30832201-30832838,30833643-30833838,30833975-308341... 28 8.6
>10_08_0985 -
22042801-22042963,22043019-22043138,22043261-22043562,
22044055-22044351,22044448-22044556,22044826-22045358,
22045446-22045644,22045741-22045865,22045937-22046020,
22046093-22046221,22046337-22046465,22046593-22046739,
22047106-22047346,22047859-22047980
Length = 899
Score = 82.2 bits (194), Expect = 4e-16
Identities = 37/71 (52%), Positives = 52/71 (73%)
Frame = +3
Query: 42 PARVTLLEIPNRTEVRSKNLFSVADCKIHWQKSGDYLCVKVDRYSKVKKDKIDIKYSGMY 221
PARV+L++IP + E+R KNLFSV+DCK++WQ SG+YL V+VDRY+K KK Y
Sbjct: 390 PARVSLVQIPGKEELRQKNLFSVSDCKMYWQNSGEYLAVQVDRYTKTKK--------STY 441
Query: 222 YNFEIFHMREK 254
FE+F ++E+
Sbjct: 442 TGFELFRIKER 452
Score = 74.5 bits (175), Expect = 8e-14
Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 6/93 (6%)
Frame = +2
Query: 251 KEIPVDSVEI---KEPIQAFAWEPVGSKFSIIHGDPANISISFYQVNTGQAPTLLKK--- 412
++IP++ +E+ + I AFAWEP G +F++IHGD ISFY + T + + K
Sbjct: 452 RDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDGPKPDISFYSMKTSNNISRVSKLTT 511
Query: 413 FERKPFNHLFWSPSGQFIVLANLGLTGGALEFW 511
+ K N LFWSP G+FIV A L G LEF+
Sbjct: 512 LKGKQANALFWSPGGRFIVFAGLKGFNGQLEFY 544
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = +1
Query: 511 DTNDFTIMNVADHYQMSGIEWDPTGRYVVTGVSSLKCKMGLRAINIWSFPGARI 672
+ ++ M +H+ + I WDPTGRY+ + V+S+ +M IWSF G ++
Sbjct: 545 NVDELETMATGEHFMATDIMWDPTGRYLASAVTSVH-EME-NGFQIWSFSGKQL 596
>09_02_0022 +
3065644-3065953,3066048-3067162,3067261-3067437,
3067535-3067648,3068614-3068718,3068930-3069064,
3069148-3069203,3069277-3069382,3069515-3069631,
3069705-3069831,3069915-3070141,3070164-3070727
Length = 1050
Score = 35.9 bits (79), Expect = 0.032
Identities = 21/62 (33%), Positives = 32/62 (51%)
Frame = +2
Query: 296 AFAWEPVGSKFSIIHGDPANISISFYQVNTGQAPTLLKKFERKPFNHLFWSPSGQFIVLA 475
A W P G +F + G N+ + Y +TG+ LK +P L WSP+G+++V A
Sbjct: 211 ALCWSPDG-QFLAVPGLRNNVVM--YDRDTGEEVFTLKGEHEQPVCSLCWSPNGRYLVTA 267
Query: 476 NL 481
L
Sbjct: 268 GL 269
>02_01_0100 + 743467-744868,745066-745127
Length = 487
Score = 32.7 bits (71), Expect = 0.30
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +1
Query: 418 EEAIQPSFLVTIWAVHCPGQPWTDWWCIGVLDTNDFTIMNVADHYQMSGIEWDP--TGRY 591
EE + + IW++ P W DW +D D + NV + I DP T R
Sbjct: 337 EEDVAYYWKANIWSMPIPVGSWEDWQMECTVDVTDIAVDNVRFSELLPKIGNDPEETLRR 396
Query: 592 VVTGVSSL 615
+VTG +L
Sbjct: 397 LVTGFPTL 404
>02_01_0098 + 717857-719252,719453-719511
Length = 484
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = +1
Query: 418 EEAIQPSFLVTIWAVHCPGQPWTDWWCIGVLDTNDFTIM-NVADHYQMSGIEWDP--TGR 588
EE + + IW++ P W DW +D D ++ NV + I DP T R
Sbjct: 334 EEDVAYYWKANIWSMPIPVGSWGDWQMECTVDVTDIAVVDNVRFSELLPKIGNDPEETLR 393
Query: 589 YVVTGVSSL 615
+VTG +L
Sbjct: 394 RLVTGFPTL 402
>07_01_0084 + 657846-658538,660652-661920
Length = 653
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 469 PGQPWTDWWCIGVLDTNDFTIMNV--ADHYQMSGIEWDPTG 585
P QPW WW G+ T+ + + ++M G + PTG
Sbjct: 344 PLQPWKPWWATGIYGTDGGGECGIPYSVKFRMPGNSFVPTG 384
>04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727
Length = 706
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 272 VEIKEPIQAFAWEPVGSKFSIIHGDPANISISF 370
+E++ P+ + + P G+ F +IHG + ISF
Sbjct: 438 LEVEVPMLVYEFVPNGTLFELIHGKNQGLQISF 470
>08_01_0058 +
388989-389102,389226-389337,389457-389483,389787-389859,
389958-390061,390144-390358,390429-390528,390739-390805,
391628-391716,391810-391948,392057-392157,392921-393088,
393302-393510
Length = 505
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 547 HYQMSGIEWDPTGRYVVTGVSSLKCKM 627
HY + G+ WDP G+Y+ + S C++
Sbjct: 155 HY-VQGVAWDPLGQYIASLSSDRTCRI 180
>01_06_0864 -
32546696-32546803,32546881-32546961,32547134-32547250,
32548264-32548338,32548618-32548680,32549122-32549187,
32549254-32549325,32549403-32549504,32549588-32549765,
32549871-32549926,32551578-32551688,32551797-32551865,
32551960-32552068,32552176-32552327,32552398-32552475,
32554257-32554379,32555527-32555646,32555729-32555809,
32555881-32556027,32556112-32556190,32557223-32557297,
32558004-32558113,32558984-32559082,32559700-32559815,
32559914-32560022,32560098-32560229,32560389-32560591,
32561428-32561585,32561668-32561797,32562529-32562607,
32562806-32562829
Length = 1073
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 477 TLD*LVVHWSSGHK*LYHYECG*SLSDVWYRMGSNRTLCSD 599
TL ++VH GH Y+ +LSD+WY+ R D
Sbjct: 384 TLHSVLVHSGGGHGGHYYAFIRPALSDIWYKFDDERVTKED 424
>01_06_0503 +
29864421-29864550,29865143-29865215,29865486-29865537,
29866496-29866506,29866793-29866819,29866892-29866910
Length = 103
Score = 28.7 bits (61), Expect = 4.9
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = -2
Query: 317 QLAPKQKPE*VP*SRRNLQEFLFPHVEDLEI-IIHSRVFNINLIFLHFRVTIYFYAQVVS 141
+LA + KP+ P N E L P L + I+H ++ +++ + I+F Q V
Sbjct: 28 RLADRTKPDDEP---HNANELLLPDKILLVVTIVHIVASSVAHSYINLVIEIHFNHQCVR 84
Query: 140 ALLPMNFTVSHRKQ 99
L P NF S K+
Sbjct: 85 ELTPRNFMNSVTKR 98
>08_02_0523 +
18150425-18150629,18150822-18150881,18150882-18150967,
18151802-18151948,18152712-18152835,18152990-18153366
Length = 332
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -3
Query: 298 SLNRFLDLDGIYRNFFSLMWK--ISKL*YIPEYLISILSFFTL 176
+++ FLD DG +RN FS W +SK Y I ++ FF L
Sbjct: 173 AISYFLDRDGSFRNSFSDGWDRFLSKHPIPFYYCIGVVVFFVL 215
>12_01_0160 -
1212295-1213586,1213828-1213976,1214288-1214445,
1214860-1215004,1215102-1215226
Length = 622
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +3
Query: 129 WQKSGDYLCVKVDRYSKVKKDKIDIKYSGMYYNFEIFHMREKKF 260
W + DY+ K++K++I +K S Y + +++ + K+F
Sbjct: 87 WIQLMDYVKDAKPLLKKMEKNRIGLKRSAFYMAYAVYYEKHKRF 130
>01_06_0646 -
30832201-30832838,30833643-30833838,30833975-30834126,
30834258-30834303,30834992-30835216,30835374-30835414,
30835705-30835834,30835951-30836019,30836254-30836307,
30836389-30836547,30836854-30836991,30837079-30837141,
30837225-30837264,30837369-30837415,30838062-30838373
Length = 769
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 347 PANISISFYQVNTGQAPT 400
PA +S+SFY VN G+ P+
Sbjct: 592 PAAVSMSFYDVNAGEQPS 609
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,647,037
Number of Sequences: 37544
Number of extensions: 453140
Number of successful extensions: 1174
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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