Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30929
(720 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 5e-10
SB_49579| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 5e-08
SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.044
SB_33066| Best HMM Match : RF-1 (HMM E-Value=5.9) 31 0.94
SB_50935| Best HMM Match : TPR_2 (HMM E-Value=0.00065) 29 3.8
SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_21866| Best HMM Match : UCH (HMM E-Value=0) 28 6.6
SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 55.6 bits (128), Expect(2) = 5e-10
Identities = 24/36 (66%), Positives = 30/36 (83%)
Frame = +3
Query: 9 LAYWVAEDKDVPARVTLLEIPNRTEVRSKNLFSVAD 116
+A+WV E KD PARVTL++IP R EVR KNLF+V+D
Sbjct: 322 IAFWVPEVKDTPARVTLMQIPERHEVRVKNLFNVSD 357
Score = 55.2 bits (127), Expect = 5e-08
Identities = 27/56 (48%), Positives = 35/56 (62%)
Frame = +1
Query: 511 DTNDFTIMNVADHYQMSGIEWDPTGRYVVTGVSSLKCKMGLRAINIWSFPGARILQ 678
DT D+ MN A+H+ + +EWDPTGRYV T VS K+ IWSF G ++LQ
Sbjct: 417 DTGDWVCMNQAEHFMATDVEWDPTGRYVATSVSWWAHKVD-NGYFIWSFQG-KLLQ 470
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +2
Query: 344 DPANISISFYQVNTGQAPT----LLKKFERKPFNHLFWSPSGQFIVLANLGLTGGALEF 508
D + ++V Q P + + +E++ N + WSP+GQF VLA L G LEF
Sbjct: 357 DALYYNFELFRVRERQIPVDSLEMKETYEKRQANTISWSPNGQFCVLAGLRSMSGVLEF 415
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +2
Query: 236 LPHEGKEIPVDSVEIKEPIQAFAWEP-VGSKFSIIHGDPANISISFYQVNTGQAPTLLKK 412
L E +E E +E ++++ +P ++S+IH A +S + NT Q P L+++
Sbjct: 162 LKEEWQEPTKQPYEQQENLRSWLLDPDCNDQYSVIHS--AGDKLSIFS-NTPQEPILVRE 218
Query: 413 FERKPFNHLFWSPSGQFI 466
+ + WSP G ++
Sbjct: 219 RDNWTEMYAQWSPKGTYL 236
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = +2
Query: 251 KEIPVDSVEIKEPIQ-----AFAWEPVGSKFSIIHGDPANISISFYQVNTGQAPTLLKKF 415
++IPVDS+E+KE + +W P G +F ++ G + + + +TG + +
Sbjct: 371 RQIPVDSLEMKETYEKRQANTISWSPNG-QFCVLAGLRSMSGVLEFH-DTGDW-VCMNQA 427
Query: 416 ERKPFNHLFWSPSGQFI 466
E + W P+G+++
Sbjct: 428 EHFMATDVEWDPTGRYV 444
Score = 26.2 bits (55), Expect(2) = 5e-10
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +3
Query: 216 MYYNFEIFHMREKK 257
+YYNFE+F +RE++
Sbjct: 359 LYYNFELFRVRERQ 372
>SB_49579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 115
Score = 55.2 bits (127), Expect = 5e-08
Identities = 27/56 (48%), Positives = 35/56 (62%)
Frame = +1
Query: 511 DTNDFTIMNVADHYQMSGIEWDPTGRYVVTGVSSLKCKMGLRAINIWSFPGARILQ 678
DT D+ MN A+H+ + +EWDPTGRYV T VS K+ IWSF G ++LQ
Sbjct: 36 DTGDWVCMNQAEHFMATDVEWDPTGRYVATSVSWWAHKVD-NGYFIWSFQG-KLLQ 89
Score = 37.9 bits (84), Expect = 0.008
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +2
Query: 413 FERKPFNHLFWSPSGQFIVLANLGLTGGALEF 508
+E++ N + WSP+GQF VLA L G LEF
Sbjct: 3 YEKRQANTISWSPNGQFCVLAGLRSMSGVLEF 34
>SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 35.5 bits (78), Expect = 0.044
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 526 TIMNVADHYQMSGIEWDPTGRYVVTGVSSLKCKM 627
TI+ HY + G+ WDP G+YVVT S C++
Sbjct: 227 TILKDHKHY-VQGVCWDPLGQYVVTNSSDRSCRL 259
>SB_33066| Best HMM Match : RF-1 (HMM E-Value=5.9)
Length = 378
Score = 31.1 bits (67), Expect = 0.94
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 568 EWDPTGRYVVTGVSSLKCKMGLRAINIWSFPGARILQGEVXE 693
EW P G +++T ++ + + G IW + GA Q +V E
Sbjct: 306 EWSPDGEHILTATTAPRLREG-NGFKIWHYTGALKYQTDVKE 346
>SB_50935| Best HMM Match : TPR_2 (HMM E-Value=0.00065)
Length = 1033
Score = 29.1 bits (62), Expect = 3.8
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Frame = -3
Query: 517 LCPELQCTTSQSKVGQDNELPRW*PEKMVEWLPLELLEQCRCLASIYLIEADTDVCWVTV 338
L P + S+ G+ ++LP + K + WLP E+ E CR + + +D+ + +
Sbjct: 277 LGPSVIVLDGASEFGKSHDLPAY-QAKELTWLPKEIPEFCR----LIITTIKSDITYRAL 331
Query: 337 NNR------EL*TNWLPSKSLNRFLD--LDGIYRNFFSLMW--KI--SKL*YIPEYLISI 194
R EL N L +KS + L+ + Y NF KI SKL +P Y +++
Sbjct: 332 KQRKDSYFIEL-NNVLDAKSKRKLLEEYVGANYTNFMDEQHYAKILSSKLSELPMYYVAL 390
Query: 193 LS 188
S
Sbjct: 391 AS 392
>SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3824
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +1
Query: 499 IGVLDTNDFTIMNVADHYQMSGIEWDPTGRYVVTGVSSLKCKMGLRAINIWSFP 660
I VLDTND T + YQ++ + P GR ++ VS+ G A +SFP
Sbjct: 2440 INVLDTNDNTPKFLNSSYQVTLSKTIPAGRAILR-VSATDQDSGSNAQIKYSFP 2492
>SB_21866| Best HMM Match : UCH (HMM E-Value=0)
Length = 2165
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 263 VDSVEIKEPIQAFAWEPVGSKFSIIHGDPANISISF 370
V +++ + +Q AW G +I G P +IS +F
Sbjct: 999 VPDLKVIKAVQQLAWASAGGTLQLIDGSPEDISKTF 1034
>SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +2
Query: 212 WNVL*FRDLPHEGKEIPVDSVEIKEPIQAFAWEPVGSKFSIIH 340
W +L PH K I D +EIK+ I + P GSK + +H
Sbjct: 65 WRIL--SGFPHY-KLIEDDHIEIKDGIISLCLSPDGSKLAAVH 104
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,765,548
Number of Sequences: 59808
Number of extensions: 523010
Number of successful extensions: 1300
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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