Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30929
         (720 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY122066-1|AAM52578.1|  690|Drosophila melanogaster AT09438p pro...   146   2e-35
AE013599-2499|AAG22261.1|  690|Drosophila melanogaster CG4878-PB...   146   2e-35
AE013599-2498|AAF57842.1|  690|Drosophila melanogaster CG4878-PA...   146   2e-35
AY061388-1|AAL28936.1|  335|Drosophila melanogaster LD31217p pro...    37   0.024
AE013599-1967|AAF58195.1|  335|Drosophila melanogaster CG12797-P...    37   0.024
BT016167-1|AAV37052.1| 1047|Drosophila melanogaster AT04626p pro...    32   0.90 
AY069414-1|AAL39559.1|  437|Drosophila melanogaster LD11036p pro...    32   0.90 
AE014298-1052|AAF46267.1| 1047|Drosophila melanogaster CG12153-P...    32   0.90 
AJ222709-1|CAA10954.1| 1047|Drosophila melanogaster HIRA protein.      31   1.2  
AF031081-1|AAC48360.1| 1061|Drosophila melanogaster HIRA homolog...    30   2.8  
BT025233-1|ABF17924.1|  818|Drosophila melanogaster FI01002p pro...    29   6.4  
AY118369-1|AAM48398.1|  707|Drosophila melanogaster RE11711p pro...    29   6.4  
AF289994-1|AAG02459.1|  818|Drosophila melanogaster thyroid horm...    29   6.4  
AE013599-3354|AAF46815.2|  818|Drosophila melanogaster CG5465-PA...    29   6.4  

>AY122066-1|AAM52578.1|  690|Drosophila melanogaster AT09438p
           protein.
          Length = 690

 Score =  146 bits (355), Expect = 2e-35
 Identities = 62/85 (72%), Positives = 75/85 (88%), Gaps = 2/85 (2%)
 Frame = +3

Query: 9   LAYWVAEDKDVPARVTLLEIPNRTEVRSKNLFSVADCKIHWQKSGDYLCVKVDRYSKVKK 188
           +AYWV E   +PARVTL+EIP + E+R+KNLF VADCK+HWQKSGDYLCVKVDRYSK+KK
Sbjct: 351 IAYWVEEQNQIPARVTLMEIPKKREIRNKNLFHVADCKLHWQKSGDYLCVKVDRYSKLKK 410

Query: 189 DK--IDIKYSGMYYNFEIFHMREKK 257
           DK  +D+K+ GM+YNFEIFHMREK+
Sbjct: 411 DKKDLDVKFLGMFYNFEIFHMREKE 435



 Score =  119 bits (287), Expect = 3e-27
 Identities = 56/86 (65%), Positives = 68/86 (79%)
 Frame = +2

Query: 251 KEIPVDSVEIKEPIQAFAWEPVGSKFSIIHGDPANISISFYQVNTGQAPTLLKKFERKPF 430
           KEIPVDSVEI+E I AFAWEPVG+KFSIIHG+  + ++SFY+VN G  P+L+K+ E+K  
Sbjct: 434 KEIPVDSVEIRELILAFAWEPVGNKFSIIHGETNSSNVSFYEVNKGVKPSLVKRLEKKSC 493

Query: 431 NHLFWSPSGQFIVLANLGLTGGALEF 508
            HLFWSP GQFIV+AN  LT G  EF
Sbjct: 494 THLFWSPRGQFIVMAN--LTMGTFEF 517



 Score = 58.8 bits (136), Expect = 7e-09
 Identities = 29/55 (52%), Positives = 38/55 (69%)
 Frame = +1

Query: 514 TNDFTIMNVADHYQMSGIEWDPTGRYVVTGVSSLKCKMGLRAINIWSFPGARILQ 678
           TND+ I    DH++ S +EWDPTGRYVVTGVSS K K      N+++F G RI++
Sbjct: 521 TNDYIITASPDHFRASEVEWDPTGRYVVTGVSSWKVKED-TGFNMYTFQG-RIIK 573


>AE013599-2499|AAG22261.1|  690|Drosophila melanogaster CG4878-PB,
           isoform B protein.
          Length = 690

 Score =  146 bits (355), Expect = 2e-35
 Identities = 62/85 (72%), Positives = 75/85 (88%), Gaps = 2/85 (2%)
 Frame = +3

Query: 9   LAYWVAEDKDVPARVTLLEIPNRTEVRSKNLFSVADCKIHWQKSGDYLCVKVDRYSKVKK 188
           +AYWV E   +PARVTL+EIP + E+R+KNLF VADCK+HWQKSGDYLCVKVDRYSK+KK
Sbjct: 351 IAYWVEEQNQIPARVTLMEIPKKREIRNKNLFHVADCKLHWQKSGDYLCVKVDRYSKLKK 410

Query: 189 DK--IDIKYSGMYYNFEIFHMREKK 257
           DK  +D+K+ GM+YNFEIFHMREK+
Sbjct: 411 DKKDLDVKFLGMFYNFEIFHMREKE 435



 Score =  119 bits (287), Expect = 3e-27
 Identities = 56/86 (65%), Positives = 68/86 (79%)
 Frame = +2

Query: 251 KEIPVDSVEIKEPIQAFAWEPVGSKFSIIHGDPANISISFYQVNTGQAPTLLKKFERKPF 430
           KEIPVDSVEI+E I AFAWEPVG+KFSIIHG+  + ++SFY+VN G  P+L+K+ E+K  
Sbjct: 434 KEIPVDSVEIRELILAFAWEPVGNKFSIIHGETNSSNVSFYEVNKGVKPSLVKRLEKKSC 493

Query: 431 NHLFWSPSGQFIVLANLGLTGGALEF 508
            HLFWSP GQFIV+AN  LT G  EF
Sbjct: 494 THLFWSPRGQFIVMAN--LTMGTFEF 517



 Score = 58.8 bits (136), Expect = 7e-09
 Identities = 29/55 (52%), Positives = 38/55 (69%)
 Frame = +1

Query: 514 TNDFTIMNVADHYQMSGIEWDPTGRYVVTGVSSLKCKMGLRAINIWSFPGARILQ 678
           TND+ I    DH++ S +EWDPTGRYVVTGVSS K K      N+++F G RI++
Sbjct: 521 TNDYIITASPDHFRASEVEWDPTGRYVVTGVSSWKVKED-TGFNMYTFQG-RIIK 573


>AE013599-2498|AAF57842.1|  690|Drosophila melanogaster CG4878-PA,
           isoform A protein.
          Length = 690

 Score =  146 bits (355), Expect = 2e-35
 Identities = 62/85 (72%), Positives = 75/85 (88%), Gaps = 2/85 (2%)
 Frame = +3

Query: 9   LAYWVAEDKDVPARVTLLEIPNRTEVRSKNLFSVADCKIHWQKSGDYLCVKVDRYSKVKK 188
           +AYWV E   +PARVTL+EIP + E+R+KNLF VADCK+HWQKSGDYLCVKVDRYSK+KK
Sbjct: 351 IAYWVEEQNQIPARVTLMEIPKKREIRNKNLFHVADCKLHWQKSGDYLCVKVDRYSKLKK 410

Query: 189 DK--IDIKYSGMYYNFEIFHMREKK 257
           DK  +D+K+ GM+YNFEIFHMREK+
Sbjct: 411 DKKDLDVKFLGMFYNFEIFHMREKE 435



 Score =  119 bits (287), Expect = 3e-27
 Identities = 56/86 (65%), Positives = 68/86 (79%)
 Frame = +2

Query: 251 KEIPVDSVEIKEPIQAFAWEPVGSKFSIIHGDPANISISFYQVNTGQAPTLLKKFERKPF 430
           KEIPVDSVEI+E I AFAWEPVG+KFSIIHG+  + ++SFY+VN G  P+L+K+ E+K  
Sbjct: 434 KEIPVDSVEIRELILAFAWEPVGNKFSIIHGETNSSNVSFYEVNKGVKPSLVKRLEKKSC 493

Query: 431 NHLFWSPSGQFIVLANLGLTGGALEF 508
            HLFWSP GQFIV+AN  LT G  EF
Sbjct: 494 THLFWSPRGQFIVMAN--LTMGTFEF 517



 Score = 58.8 bits (136), Expect = 7e-09
 Identities = 29/55 (52%), Positives = 38/55 (69%)
 Frame = +1

Query: 514 TNDFTIMNVADHYQMSGIEWDPTGRYVVTGVSSLKCKMGLRAINIWSFPGARILQ 678
           TND+ I    DH++ S +EWDPTGRYVVTGVSS K K      N+++F G RI++
Sbjct: 521 TNDYIITASPDHFRASEVEWDPTGRYVVTGVSSWKVKED-TGFNMYTFQG-RIIK 573


>AY061388-1|AAL28936.1|  335|Drosophila melanogaster LD31217p
           protein.
          Length = 335

 Score = 37.1 bits (82), Expect = 0.024
 Identities = 22/70 (31%), Positives = 31/70 (44%)
 Frame = +2

Query: 281 KEPIQAFAWEPVGSKFSIIHGDPANISISFYQVNTGQAPTLLKKFERKPFNHLFWSPSGQ 460
           K  I   AW P G+ F+    D A I I     NT    T+L    ++    + WSP GQ
Sbjct: 14  KGRIWGVAWHPKGNVFASCGEDKA-IRIWSLTGNTWSTKTILSDGHKRTIREIRWSPCGQ 72

Query: 461 FIVLANLGLT 490
           ++  A+   T
Sbjct: 73  YLASASFDAT 82


>AE013599-1967|AAF58195.1|  335|Drosophila melanogaster CG12797-PA
           protein.
          Length = 335

 Score = 37.1 bits (82), Expect = 0.024
 Identities = 22/70 (31%), Positives = 31/70 (44%)
 Frame = +2

Query: 281 KEPIQAFAWEPVGSKFSIIHGDPANISISFYQVNTGQAPTLLKKFERKPFNHLFWSPSGQ 460
           K  I   AW P G+ F+    D A I I     NT    T+L    ++    + WSP GQ
Sbjct: 14  KGRIWGVAWHPKGNVFASCGEDKA-IRIWSLTGNTWSTKTILSDGHKRTIREIRWSPCGQ 72

Query: 461 FIVLANLGLT 490
           ++  A+   T
Sbjct: 73  YLASASFDAT 82


>BT016167-1|AAV37052.1| 1047|Drosophila melanogaster AT04626p
           protein.
          Length = 1047

 Score = 31.9 bits (69), Expect = 0.90
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
 Frame = +2

Query: 290 IQAFAWEPVGSKFSIIHGDPANISISFYQVNTGQAPTLLKKFER----KPFNHLFWSPSG 457
           ++  +W+P+G +F     D  +I I +  +N   + T+ + FE          L WSP G
Sbjct: 175 VKGVSWDPLG-RFLASQSDDRSIKI-WNTMNWSLSHTITEPFEECGGTTHILRLSWSPDG 232

Query: 458 QFIVLANLGLTGG 496
           Q++V A+  + GG
Sbjct: 233 QYLVSAH-AMNGG 244


>AY069414-1|AAL39559.1|  437|Drosophila melanogaster LD11036p
           protein.
          Length = 437

 Score = 31.9 bits (69), Expect = 0.90
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
 Frame = +2

Query: 290 IQAFAWEPVGSKFSIIHGDPANISISFYQVNTGQAPTLLKKFER----KPFNHLFWSPSG 457
           ++  +W+P+G +F     D  +I I +  +N   + T+ + FE          L WSP G
Sbjct: 175 VKGVSWDPLG-RFLASQSDDRSIKI-WNTMNWSLSHTITEPFEECGGTTHILRLSWSPDG 232

Query: 458 QFIVLANLGLTGG 496
           Q++V A+  + GG
Sbjct: 233 QYLVSAH-AMNGG 244


>AE014298-1052|AAF46267.1| 1047|Drosophila melanogaster CG12153-PA
           protein.
          Length = 1047

 Score = 31.9 bits (69), Expect = 0.90
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
 Frame = +2

Query: 290 IQAFAWEPVGSKFSIIHGDPANISISFYQVNTGQAPTLLKKFER----KPFNHLFWSPSG 457
           ++  +W+P+G +F     D  +I I +  +N   + T+ + FE          L WSP G
Sbjct: 175 VKGVSWDPLG-RFLASQSDDRSIKI-WNTMNWSLSHTITEPFEECGGTTHILRLSWSPDG 232

Query: 458 QFIVLANLGLTGG 496
           Q++V A+  + GG
Sbjct: 233 QYLVSAH-AMNGG 244


>AJ222709-1|CAA10954.1| 1047|Drosophila melanogaster HIRA protein.
          Length = 1047

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
 Frame = +2

Query: 290 IQAFAWEPVGSKFSIIHGDPANISISFYQVNTGQAPTLLKKFER----KPFNHLFWSPSG 457
           ++  +W+P+G +F     D  +I I +  +N   + T+ + FE          L WSP G
Sbjct: 175 VKGVSWDPLG-RFLASQSDDRSIKI-WNTMNWSLSHTITEPFEECGGTTHILRLSWSPDG 232

Query: 458 QFIVLANLGLTGG 496
           Q++V A+  + GG
Sbjct: 233 QYLVSAH-AMDGG 244


>AF031081-1|AAC48360.1| 1061|Drosophila melanogaster HIRA homolog
           protein.
          Length = 1061

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = +2

Query: 305 WEPVGSKFSIIHGDPANISISFYQVNTGQAPTLLKKFER----KPFNHLFWSPSGQFIVL 472
           W+P+G +F     D  +I I +  +N   + T+ + FE          L WSP GQ++V 
Sbjct: 180 WDPLG-RFLASQSDDRSIKI-WNTMNWSLSHTITEPFEECGGTTHILRLSWSPDGQYLVS 237

Query: 473 ANLGLTGG 496
           A+  + GG
Sbjct: 238 AH-AMNGG 244


>BT025233-1|ABF17924.1|  818|Drosophila melanogaster FI01002p
           protein.
          Length = 818

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 437 LFWSPSGQFIVLANLGLTGGALEFWTQMTLPL*MWLI 547
           L WSP+G+ ++L   G  GG +E W      + +W++
Sbjct: 94  LQWSPNGEQLLL---GYVGGRVEIWQPRNQSINLWVL 127


>AY118369-1|AAM48398.1|  707|Drosophila melanogaster RE11711p
           protein.
          Length = 707

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 437 LFWSPSGQFIVLANLGLTGGALEFWTQMTLPL*MWLI 547
           L WSP+G+ ++L   G  GG +E W      + +W++
Sbjct: 94  LQWSPNGEQLLL---GYVGGRVEIWQPRNQSINLWVL 127


>AF289994-1|AAG02459.1|  818|Drosophila melanogaster thyroid hormone
           receptor-associatedprotein TRAP95 protein.
          Length = 818

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 437 LFWSPSGQFIVLANLGLTGGALEFWTQMTLPL*MWLI 547
           L WSP+G+ ++L   G  GG +E W      + +W++
Sbjct: 94  LQWSPNGEQLLL---GYVGGRVEIWQPRNQSINLWVL 127


>AE013599-3354|AAF46815.2|  818|Drosophila melanogaster CG5465-PA
           protein.
          Length = 818

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 437 LFWSPSGQFIVLANLGLTGGALEFWTQMTLPL*MWLI 547
           L WSP+G+ ++L   G  GG +E W      + +W++
Sbjct: 94  LQWSPNGEQLLL---GYVGGRVEIWQPRNQSINLWVL 127


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,333,607
Number of Sequences: 53049
Number of extensions: 776956
Number of successful extensions: 2358
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2351
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3211306956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)