Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30929
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032646-10|CAA21681.1|  725|Caenorhabditis elegans Hypothetical...    53   2e-07
U21322-6|AAN65314.2|  669|Caenorhabditis elegans Hypothetical pr...    32   0.47 
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr...    32   0.47 
Z82286-5|CAB05311.1|  130|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AL032646-10|CAA21681.1|  725|Caenorhabditis elegans Hypothetical
           protein Y54E2A.11a protein.
          Length = 725

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
 Frame = +3

Query: 9   LAYWVAEDKDVPARVTLLEIPNRTEVRSKNLFSVADCKIHWQKSGDYLCVKVDRYSKVK- 185
           LAY+      VPA   LL++P+   +RS  + +VAD ++ WQKSG  L     R+ K + 
Sbjct: 371 LAYYSECTDAVPAEFGLLQVPSMQRLRSARVHNVADAQMFWQKSGKRLAFYTMRFKKKEY 430

Query: 186 KDKIDIKY-SGMYYNFEIFHMREK 254
           ++  ++KY  G  Y+ +IF + +K
Sbjct: 431 RETGEVKYVGGCQYHVDIFEIDKK 454



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
 Frame = +2

Query: 251 KEIPVDSVEIKEPIQAFAWEPVGSKFSIIHGDPANISISFYQVN-TGQAPTLLKKFER-K 424
           K++ + ++ + EP   F W+P G KF ++ G+ A  +   Y++     AP L+ K +   
Sbjct: 454 KDVSLMNLPLSEPFIHFDWDPEGDKFCVLVGNTAKATPQVYKIEANSHAPKLVSKLDAGV 513

Query: 425 PFNHLFWSPSGQFIVLANLGLTGGALEF 508
            FN + ++P G ++ +      GG + F
Sbjct: 514 HFNEVQFAPKGGWLAVLAKVSAGGNVYF 541



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 535 NVADHYQMSGIEWDPTGRYVVTGVSSLKCKMGL-RAINIWSFPGARI 672
           NV +H   +   WDPTGRY VT  S+L  + G      I++F G  +
Sbjct: 553 NVIEHPLFNKGYWDPTGRYFVT-CSTLGGRAGADLGYRIFTFQGREL 598


>U21322-6|AAN65314.2|  669|Caenorhabditis elegans Hypothetical
           protein K10D2.1b protein.
          Length = 669

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
 Frame = +2

Query: 275 EIKEPIQAFAWEPVGSKFSIIHGDPANISISFYQVNTGQ-APTLLKKF----ERKPFNHL 439
           +I+ P++  +W+P+G   + + GD     + F+  ++ Q   ++ + F    E      L
Sbjct: 174 DIQLPVKGLSWDPIGKYLASLEGDK---KLRFWATDSWQCVKSVTEPFESNIEETMLTRL 230

Query: 440 FWSPSGQFIV 469
            WSP G++++
Sbjct: 231 DWSPDGKYLM 240


>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical
           protein K10D2.1a protein.
          Length = 1223

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
 Frame = +2

Query: 275 EIKEPIQAFAWEPVGSKFSIIHGDPANISISFYQVNTGQ-APTLLKKF----ERKPFNHL 439
           +I+ P++  +W+P+G   + + GD     + F+  ++ Q   ++ + F    E      L
Sbjct: 462 DIQLPVKGLSWDPIGKYLASLEGDK---KLRFWATDSWQCVKSVTEPFESNIEETMLTRL 518

Query: 440 FWSPSGQFIV 469
            WSP G++++
Sbjct: 519 DWSPDGKYLM 528


>Z82286-5|CAB05311.1|  130|Caenorhabditis elegans Hypothetical
           protein W02A2.8 protein.
          Length = 130

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 531 NGKVICVQNSNAPPVSPRLARTMNCPD 451
           N KVI V+  +APP +PR    M   D
Sbjct: 97  NSKVIVVKKGSAPPAAPRCKPLMTVED 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,748,302
Number of Sequences: 27780
Number of extensions: 404938
Number of successful extensions: 1208
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)