Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30929
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     25   0.54 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   1.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   1.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   1.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.2  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   5.1  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   5.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.1  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +2

Query: 410 KFERKPFNHLFWSPSGQFIVLANLGLTGGALEFWTQMTLP 529
           K+ RK F    WS SG    L N+ L   A  F    T P
Sbjct: 156 KWSRKGFLRTRWSISGTVFDLINIHLFHDASNFIAMETFP 195


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +3

Query: 54  TLLEIPNRTEVRS---KNLFSVADCKIHWQKSGDYLCVKVD 167
           TL + P+ T + +   KN       K+ W+  G+Y C+KVD
Sbjct: 224 TLRKSPSLTSLNAYLIKNQTITCPIKVSWR--GNYSCLKVD 262


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +3

Query: 54  TLLEIPNRTEVRS---KNLFSVADCKIHWQKSGDYLCVKVD 167
           TL + P+ T + +   KN       K+ W+  G+Y C+KVD
Sbjct: 275 TLRKSPSLTSLNAYLIKNQTITCPIKVSWR--GNYSCLKVD 313


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +3

Query: 54  TLLEIPNRTEVRS---KNLFSVADCKIHWQKSGDYLCVKVD 167
           TL + P+ T + +   KN       K+ W+  G+Y C+KVD
Sbjct: 224 TLRKSPSLTSLNAYLIKNQTITCPIKVSWR--GNYSCLKVD 262


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 117 CKIHWQKSGDYLCVKVD 167
           C+  +++ G+Y C+KVD
Sbjct: 277 CQRRFEEQGNYSCLKVD 293


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 582 CWIPFDTRHLIMI 544
           CW PF T+ L+ +
Sbjct: 282 CWAPFHTQRLLYV 294


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 582 CWIPFDTRHLI 550
           CW+PF T +L+
Sbjct: 21  CWLPFFTMYLV 31


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 582 CWIPFDTRHLI 550
           CW+PF T +L+
Sbjct: 469 CWLPFFTMYLV 479


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,891
Number of Sequences: 438
Number of extensions: 4841
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)