Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30929
(720 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 84 8e-17
At5g25780.1 68418.m03060 eukaryotic translation initiation facto... 84 8e-17
At1g49015.1 68414.m05496 eukaryotic translation initiation facto... 77 2e-14
At1g73180.1 68414.m08469 eukaryotic translation initiation facto... 39 0.004
At2g25580.1 68415.m03064 pentatricopeptide (PPR) repeat-containi... 31 1.0
At5g64630.3 68418.m08123 transducin family protein / WD-40 repea... 29 2.3
At5g64630.2 68418.m08122 transducin family protein / WD-40 repea... 29 2.3
At5g64630.1 68418.m08121 transducin family protein / WD-40 repea... 29 2.3
At5g24080.1 68418.m02828 protein kinase family protein contains ... 29 2.3
At1g09750.1 68414.m01094 chloroplast nucleoid DNA-binding protei... 29 4.1
At5g17960.1 68418.m02106 DC1 domain-containing protein contains ... 28 5.4
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain... 28 5.4
At3g13050.1 68416.m01626 transporter-related low similarity to a... 28 5.4
At3g08790.1 68416.m01021 VHS domain-containing protein / GAT dom... 28 7.2
At1g22460.1 68414.m02807 expressed protein similar to axi 1 [Nic... 28 7.2
At5g51490.1 68418.m06386 pectinesterase family protein contains ... 27 9.5
At5g05570.1 68418.m00605 transducin family protein / WD-40 repea... 27 9.5
At3g10250.2 68416.m01227 expressed protein 27 9.5
At3g10250.1 68416.m01226 expressed protein 27 9.5
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 84.2 bits (199), Expect = 8e-17
Identities = 39/71 (54%), Positives = 54/71 (76%)
Frame = +3
Query: 42 PARVTLLEIPNRTEVRSKNLFSVADCKIHWQKSGDYLCVKVDRYSKVKKDKIDIKYSGMY 221
PA+V L++IP++ E+R KNLFSV+DCK++WQ SG+YL VKVDRY+K KK YSG
Sbjct: 385 PAKVALVQIPSKVELRQKNLFSVSDCKMYWQSSGEYLAVKVDRYTKTKKS----TYSG-- 438
Query: 222 YNFEIFHMREK 254
FE+F ++E+
Sbjct: 439 --FELFRIKER 447
Score = 76.6 bits (180), Expect = 2e-14
Identities = 38/93 (40%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Frame = +2
Query: 251 KEIPVDSVEI---KEPIQAFAWEPVGSKFSIIHGDPANISISFYQVNTGQAPTLLKK--- 412
++IP++ +E+ + I AFAWEP G +F++IHGD +SFY + T Q + K
Sbjct: 447 RDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDQPRPDVSFYSMKTAQNTGRVSKLAT 506
Query: 413 FERKPFNHLFWSPSGQFIVLANLGLTGGALEFW 511
+ K N LFWSP+G++I+LA L G LEF+
Sbjct: 507 LKAKQANALFWSPTGKYIILAGLKGFNGQLEFF 539
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/51 (43%), Positives = 31/51 (60%)
Frame = +1
Query: 511 DTNDFTIMNVADHYQMSGIEWDPTGRYVVTGVSSLKCKMGLRAINIWSFPG 663
+ ++ M A+H+ + IEWDPTGRYV T V+S+ +M IWSF G
Sbjct: 540 NVDELETMATAEHFMATDIEWDPTGRYVATAVTSVH-EME-NGFTIWSFNG 588
>At5g25780.1 68418.m03060 eukaryotic translation initiation factor 3
subunit 9, putative / eIF-3 eta, putative / eIF3b,
putative nearly identical to SP|Q9C5Z1 Eukaryotic
translation initiation factor 3 subunit 9 (eIF-3 eta)
(eIF3 p110) (eIF3b) {Arabidopsis thaliana}
Length = 714
Score = 84.2 bits (199), Expect = 8e-17
Identities = 39/71 (54%), Positives = 54/71 (76%)
Frame = +3
Query: 42 PARVTLLEIPNRTEVRSKNLFSVADCKIHWQKSGDYLCVKVDRYSKVKKDKIDIKYSGMY 221
PA+V L++IP++ E+R KNLFSV+DCK++WQ SG+YL VKVDRY+K KK YSG
Sbjct: 386 PAKVALVQIPSKVELRQKNLFSVSDCKMYWQSSGEYLAVKVDRYTKTKKS----TYSG-- 439
Query: 222 YNFEIFHMREK 254
FE+F ++E+
Sbjct: 440 --FELFRIKER 448
Score = 76.6 bits (180), Expect = 2e-14
Identities = 38/93 (40%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Frame = +2
Query: 251 KEIPVDSVEI---KEPIQAFAWEPVGSKFSIIHGDPANISISFYQVNTGQAPTLLKK--- 412
++IP++ +E+ + I AFAWEP G +F++IHGD +SFY + T Q + K
Sbjct: 448 RDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDQPRPDVSFYSMKTAQNTGRVSKLAT 507
Query: 413 FERKPFNHLFWSPSGQFIVLANLGLTGGALEFW 511
+ K N LFWSP+G++I+LA L G LEF+
Sbjct: 508 LKAKQANALFWSPTGKYIILAGLKGFNGQLEFF 540
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +1
Query: 511 DTNDFTIMNVADHYQMSGIEWDPTGRYVVTGVSSLKCKMGLRAINIWSFPG 663
+ ++ M A+H+ + IEWDPTGRYV T V+++ +M IWSF G
Sbjct: 541 NVDELETMATAEHFMATDIEWDPTGRYVATSVTTVH-EME-NGFTIWSFNG 589
>At1g49015.1 68414.m05496 eukaryotic translation initiation
factor-related contains similarity to eukaryotic
translation initiation factor 3 subunit 9 SP:Q9C5Z1
Length = 227
Score = 76.6 bits (180), Expect = 2e-14
Identities = 40/94 (42%), Positives = 58/94 (61%), Gaps = 4/94 (4%)
Frame = +2
Query: 257 IPVDSVEIKEPIQAFAWEPVGSKFSIIHGDPANISISFYQVNTGQAPTLLKK---FERKP 427
I +++E+ E I AFAWEP G +F++IHGD + ++SFY + T Q P + K F+ K
Sbjct: 130 ITTEALEVDEKILAFAWEPSGHRFAVIHGDQSKPNVSFYSMETPQNPGKVSKLATFDDKE 189
Query: 428 FNHLFWSPSGQFIVLANLGLTGGAL-EFWTQMTL 526
+ LFWSP G+ IVLA L A+ F T ++L
Sbjct: 190 ADALFWSPRGKHIVLAGLKAASMAISSFSTWISL 223
Score = 53.6 bits (123), Expect = 1e-07
Identities = 21/48 (43%), Positives = 33/48 (68%)
Frame = +3
Query: 33 KDVPARVTLLEIPNRTEVRSKNLFSVADCKIHWQKSGDYLCVKVDRYS 176
K+ P +V L+IP E+ K++ SV+DCK++WQ G YL V+V R++
Sbjct: 68 KNQPKKVVFLQIPGYVELMHKDILSVSDCKMYWQSKGKYLAVQVTRHT 115
>At1g73180.1 68414.m08469 eukaryotic translation initiation
factor-related similar to eukaryotic translation
initiation factor 2A (GI:21956484) [Homo sapiens];
similar to Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p116) (eIF3 p110) (eIF3b)
(Swiss-Prot:P55884) [Homo sapiens]
Length = 513
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +2
Query: 287 PIQAFAWEPVGSKFSIIHGD-PANISISFYQVNTGQAPTLLKKFERKPFNHLFWSPSGQF 463
P+ W GS+F++++G PA ++I + N L + P+N L W+P G+
Sbjct: 274 PVHDVQWSFSGSEFAVVYGFMPACVTI--FDKNCKP----LMELGEGPYNTLRWNPKGRV 327
Query: 464 IVLANLGLTGGALEFW 511
+ +A G G + FW
Sbjct: 328 LCVAGFGNLPGDMAFW 343
>At2g25580.1 68415.m03064 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 567
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 473 ANLGLTGGALEFWTQMTLP-L*MWLIIIRCLVSNGIQQDAM 592
+N GL A + +M+ L W IIIRC NG +DA+
Sbjct: 252 SNCGLANEAASVFEKMSEKNLETWCIIIRCFAKNGFGEDAI 292
>At5g64630.3 68418.m08123 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 428
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +1
Query: 496 CIGVLDTNDFTIMNVAD---HYQMSGIEWDPTGRYVVTGVSSLKCKM 627
CI + D N ++ + D HY + G+ WDP +YV + S C++
Sbjct: 77 CI-IWDVNKGSVHQILDAHCHY-VQGVAWDPLAKYVASLSSDRTCRI 121
>At5g64630.2 68418.m08122 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 487
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +1
Query: 496 CIGVLDTNDFTIMNVAD---HYQMSGIEWDPTGRYVVTGVSSLKCKM 627
CI + D N ++ + D HY + G+ WDP +YV + S C++
Sbjct: 136 CI-IWDVNKGSVHQILDAHCHY-VQGVAWDPLAKYVASLSSDRTCRI 180
>At5g64630.1 68418.m08121 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 397
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +1
Query: 496 CIGVLDTNDFTIMNVAD---HYQMSGIEWDPTGRYVVTGVSSLKCKM 627
CI + D N ++ + D HY + G+ WDP +YV + S C++
Sbjct: 136 CI-IWDVNKGSVHQILDAHCHY-VQGVAWDPLAKYVASLSSDRTCRI 180
>At5g24080.1 68418.m02828 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 470
Score = 29.5 bits (63), Expect = 2.3
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -3
Query: 409 LEQCRCLASIYLIEADTDVCWV 344
L C+C+AS+Y ++ + CW+
Sbjct: 3 LSDCKCVASVYGLDDEKPYCWI 24
>At1g09750.1 68414.m01094 chloroplast nucleoid DNA-binding
protein-related contains Pfam profile PF00026:
Eukaryotic aspartyl protease;b similar to CND41,
chloroplast nucleoid DNA binding protein (GI:2541876)
[Nicotiana tabacum]
Length = 449
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 107 RKQVLGTNFSTIGDFQECYSGRN 39
RKQV ++FST+G F C+S N
Sbjct: 349 RKQVNVSSFSTLGAFDTCFSADN 371
>At5g17960.1 68418.m02106 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 599
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +3
Query: 72 NRTEVRSKNLFSVADCKIHWQKSGDYLCVKVDRYSKVKKDKIDIKYSGMYYNFEIF 239
+RT K + +CKIHW K D C V YS K + + + Y++E F
Sbjct: 396 SRTSTGFKYKCAEKNCKIHWFKI-DVPCFLVPEYSIDKVHEHPLFIAPFNYDYEPF 450
>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein
Length = 564
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +2
Query: 317 GSKFSIIHGDPANISISFYQVNTGQAPTLLKKFERKPFNHLFWSPSGQ 460
G+ S +H + +++ ++ +QV QA ++ + FER P+ L + Q
Sbjct: 161 GAVSSHLHKETSSVDVNGFQVLPSQAESVKRIFERHPYMALEFRAKNQ 208
>At3g13050.1 68416.m01626 transporter-related low similarity to
apical organic cation transporter [Sus scrofa]
GI:2062135, SP|Q02563 Synaptic vesicle protein 2 (SV2)
{Rattus norvegicus}; contains Pfam profile PF00083:
major facilitator superfamily protein
Length = 500
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 461 FIVLANLGLTGGALEFWTQMTLPL*MWLIIIRCLVSNGI 577
FI+ A + G L ++ P MWLII+RCLV G+
Sbjct: 93 FIITAVVTFVAGFLSAFS----PNYMWLIILRCLVGLGL 127
>At3g08790.1 68416.m01021 VHS domain-containing protein / GAT
domain-containing protein weak similarity to
HGF-regulated tyrosine kinase substrate [Mus musculus]
GI:1089781; contains Pfam profiles PF00790: VHS domain,
PF03127: GAT domain
Length = 607
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 344 DPANISISFYQVNTGQAPTLLKKFERKPFNHLF 442
D N + + YQV++ Q P ++K +KP + LF
Sbjct: 555 DNGNNNTNPYQVSSHQPPPMMKPMNKKPEDKLF 587
>At1g22460.1 68414.m02807 expressed protein similar to axi 1
[Nicotiana tabacum] GI:559921; contains Pfam profile
PF03138: Plant protein family
Length = 565
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -1
Query: 540 HIHNGKVICVQNSNAPPVSPRLARTMNCPDGDQKRWLNGFLSNFLSNVGAWPVFT 376
HI+N +++ S +P S +L T PD D K W + NF+ V P +T
Sbjct: 102 HINNTELVPPHVSTSPSSSSKLNITSGIPDFD-KLWKHPPNRNFVPCVSPNPSYT 155
>At5g51490.1 68418.m06386 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 536
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -1
Query: 528 GKVICVQNSNAPPVSPRLARTMNCPDGDQKRWLNGFLSN 412
G I N VSP+ +C D D + WL+ L+N
Sbjct: 109 GDTIMQLNRTLHGVSPKAGAAKSCTDFDAQTWLSTALTN 147
>At5g05570.1 68418.m00605 transducin family protein / WD-40 repeat
family protein similar to unknown protein (pir||T04661);
contains Pfam PF00400: WD domain, G-beta repeat (4
copies, 2 weak)|8683726|gb|AV524198.1|AV524198
Length = 1124
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 254 EIPVDSVEIKEPIQAFAWEPVGSKFSIIHG 343
EI V +++++P + WE + F+I+HG
Sbjct: 108 EIQVWDLDLRQPASSLKWESNITAFAILHG 137
>At3g10250.2 68416.m01227 expressed protein
Length = 324
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +2
Query: 284 EPIQAFAWEPVGSKFSIIHGDPANISISFYQVNTGQAPTLLKKFERKPF 430
+P+ E S F + P N S+S + Q+ +L+ ++R PF
Sbjct: 237 QPLSDPLLEAEASTFGFLGQIPRNFSLSDLTADFSQSSEILESYDRSPF 285
>At3g10250.1 68416.m01226 expressed protein
Length = 324
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +2
Query: 284 EPIQAFAWEPVGSKFSIIHGDPANISISFYQVNTGQAPTLLKKFERKPF 430
+P+ E S F + P N S+S + Q+ +L+ ++R PF
Sbjct: 237 QPLSDPLLEAEASTFGFLGQIPRNFSLSDLTADFSQSSEILESYDRSPF 285
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,869,550
Number of Sequences: 28952
Number of extensions: 376590
Number of successful extensions: 1079
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -