Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30928
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   1.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.4  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   3.2  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   4.2  
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    21   7.3  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   7.3  

>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 576 MVSTFSL*KKSENSDFNRFKSWLAPKQVH*TIN 478
           +VST  L KK  +  FN F++ +   QVH T N
Sbjct: 85  LVSTEMLLKKDSSEAFNEFRTKIL-AQVHGTNN 116


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 378  KFYPKQCCGGASCCVNQH 325
            ++YP + C     CVN H
Sbjct: 1211 QYYPHESCSSFYVCVNGH 1228


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 330 QHQTELPLFCNITSQSN 280
           +HQ +  +FCN +S SN
Sbjct: 481 RHQIDAKMFCNESSVSN 497


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 52  KMPVLQRIKKPTTRKGKKVLLSKEPK 129
           + P  +R+KKP  ++G      K P+
Sbjct: 207 RSPRTRRVKKPGAKQGAPTAEEKRPR 232


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -2

Query: 375 FYPKQCCGGASCCVNQHQT 319
           F P  CCG   C V   +T
Sbjct: 57  FGPSICCGPFGCLVGTPET 75


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 50  FTLNFKNTTRCTLFLS 3
           FTLNF+N+     F+S
Sbjct: 711 FTLNFRNSDELIKFIS 726


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,336
Number of Sequences: 336
Number of extensions: 3828
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)