Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30928
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces pom...    83   3e-17
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    29   0.85 
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    27   2.0  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    25   7.9  
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.9  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    25   7.9  

>SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 83.4 bits (197), Expect = 3e-17
 Identities = 37/88 (42%), Positives = 56/88 (63%)
 Frame = +3

Query: 243 QPQKDFVPFEDSSLIEKLCYKKEAALFGVGSHSKKRPHNIVLGRTLAYGILDMIELGAEE 422
           Q + + +PFED+S +E    K +AAL  + +H+KKRPHN+   R   Y +LDMIELG   
Sbjct: 61  QKKNNILPFEDASSLEFFSEKNDAALAVMATHNKKRPHNLTWVRFFNYRVLDMIELGIVN 120

Query: 423 YKAMSEFHNIKVLAGSKPCLLFNGPAWE 506
           YK++  F    ++ G+KP +LF GP ++
Sbjct: 121 YKSIQSFSATPIVPGTKPMILFQGPVFD 148



 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 34/123 (27%), Positives = 56/123 (45%)
 Frame = +1

Query: 79  KPTTRKGKKVLLSKEPKPIEGPKQSIFLQGRNPSERTRKLLKDIYDLKKPDAAYLSRKKI 258
           KP   + K+ L  +EPK +EG K +IFL+G   S+ +  +L DI+ LKKP +    +K  
Sbjct: 6   KPKNARTKRALEKREPKLVEGAKTAIFLRGNATSQISLDVLGDIHALKKPFSVNFQKKNN 65

Query: 259 LSHLKTVV*LRSYVTKKRQLCLVLVHTARSAPTTLFWVEL*LMEYWI*LNLVLKNTRQCQ 438
           +   +    L  +  K      V+    +  P  L WV          + L + N +  Q
Sbjct: 66  ILPFEDASSLEFFSEKNDAALAVMATHNKKRPHNLTWVRFFNYRVLDMIELGIVNYKSIQ 125

Query: 439 NFT 447
           +F+
Sbjct: 126 SFS 128



 Score = 31.1 bits (67), Expect = 0.16
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
 Frame = +2

Query: 506 ANQDLKRLKSLFSDFFHREKVETIRLQGLEHVLSFTATDD--------GLIYFRSYRISL 661
           A+   + +KSLF DFF  E ++ +   GL +V+  +A +          L++FR Y   L
Sbjct: 149 AHPTYRHIKSLFLDFFRGEPIQKLDSAGLSYVIVVSAAEAQEDETKPLPLVHFRVYGTKL 208

Query: 662 KKS 670
            K+
Sbjct: 209 LKT 211


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +3

Query: 231 RRLSQPQKDFVPFEDSSLIEKLCYKKEAALFGVGSHSKKRPHNI 362
           R LS  QK+ V F+D S I +   K E   +    H    P NI
Sbjct: 137 RNLSGLQKE-VDFDDESSIREAVIKSEGTYYETAPHLSSEPSNI 179


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +1

Query: 136 EGPKQSIFLQGRNPSERTRKLLK----DIYDLKKPDAAYLSRKKILSHLKTVV 282
           E P    +L   NP +  +K+ K    DIYDLKK     L   ++ S  ++V+
Sbjct: 74  ENPSSLKYLSSINPEDLGKKVEKGPRPDIYDLKKSQQFELDTSRLSSDEESVL 126


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 473 TMFIV*WTCLGANQDLKRLKSLFSD 547
           T+ I+ W C+     LK++K LFS+
Sbjct: 485 TVLILSWLCVENTVTLKKIKMLFSE 509


>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 148

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 28  VFLKFNVNKMPVLQRIKKPTTRKGKKVLLSKEPKPIEGPKQSIFL 162
           +F+ F +  M  L R+   TTR  +   L  EPK I    +  FL
Sbjct: 17  LFIAFQILSMKALARMIPDTTRTCRGHFLVSEPKTIPCLHRCAFL 61


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 252 KDFVPFEDSSLIEKLCYKKEAAL 320
           K+  P  D + +EKLC+K   AL
Sbjct: 356 KELTPSTDENKLEKLCFKASWAL 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,963,611
Number of Sequences: 5004
Number of extensions: 60793
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)