Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30928
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0103 - 18137176-18137283,18137375-18137440,18137592-181378...    67   1e-11
12_01_0978 + 9908001-9908175,9908538-9908619,9910793-9910904,991...    30   1.5  

>01_05_0103 -
           18137176-18137283,18137375-18137440,18137592-18137828,
           18137914-18138159,18138483-18138686,18138781-18138852
          Length = 310

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 38/96 (39%), Positives = 55/96 (57%), Gaps = 5/96 (5%)
 Frame = +3

Query: 234 RLSQPQKDFVPFEDS--SLIEKLCYKKEAALFGVGSHSKKRPHNIVLGRTLAYGILDMIE 407
           + S+   +  PFE    + +E    K + +L   GSHSKKRP+N+VLGRT  + I D++E
Sbjct: 60  KYSKKNDNIRPFESGGETSLEFFSLKTDCSLIVYGSHSKKRPNNLVLGRTYDHHIYDLVE 119

Query: 408 LGAEEYKAMSEFHNIKVLA---GSKPCLLFNGPAWE 506
           +G E YK++  +   K LA   GSKP   F G  +E
Sbjct: 120 VGVENYKSIESYVYDKKLAPKLGSKPFFAFIGEHFE 155


>12_01_0978 +
           9908001-9908175,9908538-9908619,9910793-9910904,
           9911965-9913737
          Length = 713

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
 Frame = +3

Query: 63  ATKNKETYNS*RKKGSTIERT*AH*RS*TKYLPSRPQPVRKDKKAT-KGYL*-FKKA*RR 236
           A  NK+  +  RK+ +TI+ +  H ++ T+        +  +K  T K Y    ++A ++
Sbjct: 266 AETNKQKADQLRKEIATIQESLTHVKAATEQAHEEEAQILAEKDVTRKTYKQALEEAEKK 325

Query: 237 LSQPQKDFVPFEDSSLIEKL 296
           LS  +KDF P    SL EKL
Sbjct: 326 LSSLKKDFDPAVYKSLKEKL 345


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,483,833
Number of Sequences: 37544
Number of extensions: 370181
Number of successful extensions: 728
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)