Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30928
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18988| Best HMM Match : Brix (HMM E-Value=3.4e-06)                  62   4e-10
SB_48675| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.22 
SB_44903| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_43611| Best HMM Match : FA_desaturase (HMM E-Value=7.6)             29   3.6  
SB_31239| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.7e-16)         28   6.3  
SB_10799| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_18988| Best HMM Match : Brix (HMM E-Value=3.4e-06)
          Length = 224

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 30/55 (54%), Positives = 39/55 (70%)
 Frame = +2

Query: 509 NQDLKRLKSLFSDFFHREKVETIRLQGLEHVLSFTATDDGLIYFRSYRISLKKSG 673
           N + KRLK++  DFF     + +RLQGLEHV+  TA  +G I+FRSYR +LKKSG
Sbjct: 73  NSEYKRLKNVLIDFFRGTVTQKVRLQGLEHVIQCTAY-EGKIFFRSYRTALKKSG 126



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 17/47 (36%), Positives = 32/47 (68%)
 Frame = +1

Query: 70  RIKKPTTRKGKKVLLSKEPKPIEGPKQSIFLQGRNPSERTRKLLKDI 210
           ++ KP T+KGK+V+ ++  K +E  K ++F++G   SE   ++LKD+
Sbjct: 5   QVVKPKTQKGKRVIENRSAKVVENTKTAMFIRGGRTSELVTQVLKDL 51


>SB_48675| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1329

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -2

Query: 387 HKLKFYPKQCCGGASCCVNQHQTEL-PLFCNITSQ 286
           HKL  YP  CC   +C V +  TE+  L C  T Q
Sbjct: 162 HKLDTYPNNCCDNQNCTVKRSDTEIFRLTCGHTFQ 196


>SB_44903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1281

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = -2

Query: 441 ILTLPCILQHQVQSYPIFHKLKFYPKQCCGGAS---CCVNQH 325
           ++TL  I + QV    + HK K   K C G      CC+N H
Sbjct: 375 VVTLTSIYERQVVELLLNHKAKINVKDCHGNTPLHFCCINGH 416


>SB_43611| Best HMM Match : FA_desaturase (HMM E-Value=7.6)
          Length = 220

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 289 RSYVTKKRQLCLVLVHTARSAPTT 360
           R Y++KK Q  L+++HT  + PTT
Sbjct: 22  RHYLSKKTQASLIILHTGYAYPTT 45


>SB_31239| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.7e-16)
          Length = 476

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +1

Query: 82  PTTRKGKKVLLSKEPKPIEGPKQSIFLQ-GRNPSERTRKLLKDIYDLKKPDAAYLSRKKI 258
           P  R   K  LSK  KP+      I LQ G NPS+  ++L+K++  +K     + +++  
Sbjct: 31  PEVRSPIKRELSKTQKPL------ITLQKGHNPSKANKQLIKEMTQVKSKQKDHHAKRGS 84

Query: 259 LSH 267
           ++H
Sbjct: 85  IAH 87


>SB_10799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 530 KSLFSDFFHREKVETIRLQGLEHVLSFTATDDGLIYF 640
           K  F DF  + K E+I L  L H++ FT  +    YF
Sbjct: 249 KDEFGDFHLKNKRESIELDELGHIVRFTYNNHVRDYF 285


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,750,433
Number of Sequences: 59808
Number of extensions: 440127
Number of successful extensions: 1003
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)