Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30928
         (700 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058248-1|AAL13477.1|  320|Drosophila melanogaster GH01229p pro...   102   5e-22
AE014297-2466|AAF55514.2|  320|Drosophila melanogaster CG7993-PA...   101   9e-22

>AY058248-1|AAL13477.1|  320|Drosophila melanogaster GH01229p
           protein.
          Length = 320

 Score =  102 bits (244), Expect = 5e-22
 Identities = 68/164 (41%), Positives = 88/164 (53%), Gaps = 6/164 (3%)
 Frame = +3

Query: 219 KKA*RRLSQPQKDFVPFEDSSLIEKLCYKKEAALFGVGSHSKKRPHNIVLGRTLAYGILD 398
           KK   ++   + D  PF+D S +E L  K +AALF  GS SKKRP NI+LGR     +LD
Sbjct: 55  KKPLVKVLNRKNDITPFDDPSSLEFLTMKNDAALFTFGSTSKKRPDNIILGRIFENEVLD 114

Query: 399 MIELGAEEYKAMSEFHNIKVLAGSKPCLLFNGPAW----ELTRI*ND*SHCSLISFTEKR 566
           M ELG + Y+A+SEF N K+ A  KPCL+FNGP W    EL R+ N      L   T +R
Sbjct: 115 MFELGIKRYQAISEFKNEKIGACVKPCLVFNGPKWAQTEELRRLRN------LFIDTFQR 168

Query: 567 WKPLDCRD*NMSSVSRLLMMA*STSDRTEYH--LRKVGQRTPRV 692
            K    R   +  V    ++         Y   L+K GQRTPR+
Sbjct: 169 EKVDSIRLQGIEHVLSFTVIDDMNILMRSYRILLKKSGQRTPRI 212



 Score = 76.2 bits (179), Expect = 4e-14
 Identities = 36/54 (66%), Positives = 44/54 (81%)
 Frame = +2

Query: 512 QDLKRLKSLFSDFFHREKVETIRLQGLEHVLSFTATDDGLIYFRSYRISLKKSG 673
           ++L+RL++LF D F REKV++IRLQG+EHVLSFT  DD  I  RSYRI LKKSG
Sbjct: 153 EELRRLRNLFIDTFQREKVDSIRLQGIEHVLSFTVIDDMNILMRSYRILLKKSG 206



 Score = 63.3 bits (147), Expect = 3e-10
 Identities = 31/63 (49%), Positives = 41/63 (65%)
 Frame = +1

Query: 64  LQRIKKPTTRKGKKVLLSKEPKPIEGPKQSIFLQGRNPSERTRKLLKDIYDLKKPDAAYL 243
           L RI+KP TRKGKKVLL++EP+ IE  +  +FL GR      +  +KD+  LKKP    L
Sbjct: 3   LLRIRKPKTRKGKKVLLAREPQLIESARTMLFLDGRKCGGNVKLCMKDLQALKKPLVKVL 62

Query: 244 SRK 252
           +RK
Sbjct: 63  NRK 65


>AE014297-2466|AAF55514.2|  320|Drosophila melanogaster CG7993-PA
           protein.
          Length = 320

 Score =  101 bits (242), Expect = 9e-22
 Identities = 50/98 (51%), Positives = 63/98 (64%)
 Frame = +3

Query: 219 KKA*RRLSQPQKDFVPFEDSSLIEKLCYKKEAALFGVGSHSKKRPHNIVLGRTLAYGILD 398
           KK   ++   + D  PF+D S +E L  K +AALF  GS SKKRP NI+LGR     +LD
Sbjct: 55  KKPLVKVLNRKNDITPFDDPSSLEFLTMKNDAALFTFGSTSKKRPDNIILGRIFENEVLD 114

Query: 399 MIELGAEEYKAMSEFHNIKVLAGSKPCLLFNGPAWELT 512
           M ELG + Y+A+SEF N K+ A  KPCL+FNGP W  T
Sbjct: 115 MFELGIKRYQAISEFKNEKIGACVKPCLVFNGPKWAQT 152



 Score = 78.6 bits (185), Expect = 8e-15
 Identities = 37/54 (68%), Positives = 45/54 (83%)
 Frame = +2

Query: 512 QDLKRLKSLFSDFFHREKVETIRLQGLEHVLSFTATDDGLIYFRSYRISLKKSG 673
           ++L+RL++LF D F REKV++IRLQG+EHVLSFT TDD  I  RSYRI LKKSG
Sbjct: 153 EELRRLRNLFIDTFQREKVDSIRLQGIEHVLSFTVTDDMNILMRSYRILLKKSG 206



 Score = 63.3 bits (147), Expect = 3e-10
 Identities = 31/63 (49%), Positives = 41/63 (65%)
 Frame = +1

Query: 64  LQRIKKPTTRKGKKVLLSKEPKPIEGPKQSIFLQGRNPSERTRKLLKDIYDLKKPDAAYL 243
           L RI+KP TRKGKKVLL++EP+ IE  +  +FL GR      +  +KD+  LKKP    L
Sbjct: 3   LLRIRKPKTRKGKKVLLAREPQLIESARTMLFLDGRKCGGNVKLCMKDLQALKKPLVKVL 62

Query: 244 SRK 252
           +RK
Sbjct: 63  NRK 65


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,331,553
Number of Sequences: 53049
Number of extensions: 652259
Number of successful extensions: 1199
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)