Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30928
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024810-7|AAF60765.1|  297|Caenorhabditis elegans Hypothetical ...    69   3e-12
U40059-1|AAA81138.3|  867|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z81592-13|CAB76412.2|  421|Caenorhabditis elegans Hypothetical p...    28   5.6  
Z78016-9|CAB76723.2|  421|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z81493-6|CAB04038.1|  335|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z81113-2|CAB03279.1|  510|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AC087079-15|ABF71716.1|  152|Caenorhabditis elegans Hypothetical...    27   9.8  

>AC024810-7|AAF60765.1|  297|Caenorhabditis elegans Hypothetical
           protein Y54E10A.10 protein.
          Length = 297

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 34/80 (42%), Positives = 49/80 (61%)
 Frame = +3

Query: 267 FEDSSLIEKLCYKKEAALFGVGSHSKKRPHNIVLGRTLAYGILDMIELGAEEYKAMSEFH 446
           FED + I +   K + +LF +GS+SKK+P+ +  GRT    +LDM EL    YK+ S F 
Sbjct: 69  FEDETPIVRAGSKFDTSLFVLGSNSKKKPNCLTFGRTYDGQLLDMAELRITSYKSSSNFE 128

Query: 447 NIKVLAGSKPCLLFNGPAWE 506
             K+  GSKPC++  G A+E
Sbjct: 129 AAKMTLGSKPCVILEGAAFE 148



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 26/52 (50%), Positives = 36/52 (69%)
 Frame = +2

Query: 515 DLKRLKSLFSDFFHREKVETIRLQGLEHVLSFTATDDGLIYFRSYRISLKKS 670
           D+KR+ +L  D+F   KV+T+RL+GLE V+ FTA D+  +  R YR  LKKS
Sbjct: 152 DMKRIGNLMVDWFRGPKVDTVRLEGLETVIVFTALDETNLALRVYRPMLKKS 203



 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 19/53 (35%), Positives = 36/53 (67%)
 Frame = +1

Query: 70  RIKKPTTRKGKKVLLSKEPKPIEGPKQSIFLQGRNPSERTRKLLKDIYDLKKP 228
           R++K  T+KGK+VL+++  K +E  K+++F +G   +E     + D++D+KKP
Sbjct: 3   RVEKIKTKKGKRVLVNRASKTVENDKKALFCRGAKTNEIISHAMMDLFDMKKP 55


>U40059-1|AAA81138.3|  867|Caenorhabditis elegans Hypothetical
           protein K03C7.1 protein.
          Length = 867

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 76  KKPTTRKGKKVLLSKEPKPIEGPKQSIFLQGRNPSE 183
           KKPT +   K L  +EPKP E PK +   + + P E
Sbjct: 320 KKPTDKPKPKDLPKEEPKPAEPPKPAAPKKWKPPWE 355


>Z81592-13|CAB76412.2|  421|Caenorhabditis elegans Hypothetical
           protein R186.6 protein.
          Length = 421

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +1

Query: 64  LQRIKKPTTRKGKKVLLSKEPKPIEGPKQSIFLQGRNPSERTRKLLK 204
           L R+++   R  KKV +   P PI  P     +   NP   T K  K
Sbjct: 43  LGRVRRSERRMAKKVPMMATPPPIPPPMTPTHIAIHNPKNSTSKRWK 89


>Z78016-9|CAB76723.2|  421|Caenorhabditis elegans Hypothetical
           protein R186.6 protein.
          Length = 421

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +1

Query: 64  LQRIKKPTTRKGKKVLLSKEPKPIEGPKQSIFLQGRNPSERTRKLLK 204
           L R+++   R  KKV +   P PI  P     +   NP   T K  K
Sbjct: 43  LGRVRRSERRMAKKVPMMATPPPIPPPMTPTHIAIHNPKNSTSKRWK 89


>Z81493-6|CAB04038.1|  335|Caenorhabditis elegans Hypothetical
           protein F01D5.7a protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query: 264 PFEDSSLIEKLCYKKEAALFGVGSHSKKRP--HNIVLGRTLAYGILDMIELGAEEYKAMS 437
           P ++++ I+K+C+     L   G H ++ P  H + L   L   +  +I  GA  +  +S
Sbjct: 238 PDKETTCIDKICHINTRVLICHGDHDQRIPMTHGMALYENLKNPVPPLIVHGANHHSIIS 297


>Z81113-2|CAB03279.1|  510|Caenorhabditis elegans Hypothetical
           protein T03F6.2 protein.
          Length = 510

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +1

Query: 64  LQRIKKPTTRKGKKVLLSKEPKPIEGPKQSIFLQGRNPSERTRKLLKDIYDLKKPDA 234
           L  +KK    +   +    EPKP E PK      G+    + RK    I+D+++ +A
Sbjct: 344 LNELKKHMKEEDSTIFTEAEPKPDETPK------GKKNKRKDRKKGNGIFDVEETEA 394


>AC087079-15|ABF71716.1|  152|Caenorhabditis elegans Hypothetical
           protein Y37E3.19 protein.
          Length = 152

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 265 HLKTVV*LRSYVTKKRQLCLVLVHTARSAPTTLFWVE 375
           H+KT V  RS + +K Q C V    +  A TT  +V+
Sbjct: 61  HIKTAVPTRSLLRQKHQQCPVHYEFSEDATTTTTFVD 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,410,199
Number of Sequences: 27780
Number of extensions: 342045
Number of successful extensions: 721
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)