Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30928
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           27   0.23 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.8  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   4.9  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   4.9  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 317 SVWCWFTQQEAPPQH 361
           SVWCW T++E  PQ+
Sbjct: 456 SVWCWDTRKEYIPQN 470


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 431 CLVFFSTKFNHIQYSIS*SSTQN 363
           CL +FST  N I Y++  +  +N
Sbjct: 303 CLYYFSTTINPILYNVMSAKYRN 325


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 431 CLVFFSTKFNHIQYSI 384
           CL +FST  N I Y++
Sbjct: 315 CLYYFSTTINPILYNL 330


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 384 YGILDMIELGAEEYKAMSEFHN 449
           Y I +   LG  EY+A+ E H+
Sbjct: 322 YDISNKRRLGLTEYQAVKEMHD 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,405
Number of Sequences: 438
Number of extensions: 3987
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)