Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30928
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23620.1 68416.m02971 brix domain-containing protein contains...    64   9e-11
At4g30710.2 68417.m04353 expressed protein contains Pfam domain,...    31   0.73 
At4g30710.1 68417.m04352 expressed protein contains Pfam domain,...    31   0.73 
At5g43810.1 68418.m05357 pinhead protein (PINHEAD) / zwille prot...    30   1.7  
At3g02050.1 68416.m00168 potassium transporter (KUP3) nearly ide...    29   2.2  
At4g30740.1 68417.m04356 expressed protein hypothetical protein ...    28   5.2  
At2g40850.1 68415.m05043 phosphatidylinositol 3- and 4-kinase fa...    28   5.2  
At1g02380.1 68414.m00184 expressed protein                             28   6.8  
At2g30070.1 68415.m03658 potassium transporter (KUP1) identical ...    27   9.0  
At1g06450.1 68414.m00683 CCR4-NOT transcription complex protein,...    27   9.0  

>At3g23620.1 68416.m02971 brix domain-containing protein contains
           Pfam domain, PF04427: Brix domain
          Length = 314

 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 5/96 (5%)
 Frame = +3

Query: 234 RLSQPQKDFVPFEDS--SLIEKLCYKKEAALFGVGSHSKKRPHNIVLGRTLAYGILDMIE 407
           R S+  ++  PFE    + +E    K + ++F  GSH+KKRP N+VLGR   + + D+IE
Sbjct: 59  RYSRRNENIRPFESGGETSLEFFSQKTDCSIFVYGSHTKKRPDNLVLGRMYDHQVYDLIE 118

Query: 408 LGAEEYKAMSEFHNIKVLA---GSKPCLLFNGPAWE 506
           +G E +K++  F   K  A   G+KP + F G  +E
Sbjct: 119 VGIENFKSLRAFSYDKKFAPHEGTKPFICFIGEGFE 154



 Score = 35.9 bits (79), Expect = 0.026
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +2

Query: 515 DLKRLKSLFSDFFHREKVETIRLQGLEHVLSFTATDDGLIYFRSYRISLKKSG 673
           +LK LK + +D F  E V+ + L GL+     +A     ++     + LKKSG
Sbjct: 158 ELKHLKEVLTDLFRGEVVDNLNLTGLDRAYVCSAISPTKVFLTHCALKLKKSG 210


>At4g30710.2 68417.m04353 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 43  NVNKMPVLQRIKKPTTRKGKKVLLSKEPKPIEGPKQSIFLQGRNPS 180
           +V++ P  +R + P   K     LS+  KP++GP   +  Q R PS
Sbjct: 166 SVSRKPTPERKRSPLKGKNNVSDLSENSKPVDGPHSRLIEQHRWPS 211


>At4g30710.1 68417.m04352 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 43  NVNKMPVLQRIKKPTTRKGKKVLLSKEPKPIEGPKQSIFLQGRNPS 180
           +V++ P  +R + P   K     LS+  KP++GP   +  Q R PS
Sbjct: 166 SVSRKPTPERKRSPLKGKNNVSDLSENSKPVDGPHSRLIEQHRWPS 211


>At5g43810.1 68418.m05357 pinhead protein (PINHEAD) / zwille protein
           (ZWILLE) identical to SP|Q9XGW1 PINHEAD protein (ZWILLE
           protein) {Arabidopsis thaliana}; contains Pfam profiles
           PF02171: Piwi domain, PF02170: PAZ domain
          Length = 988

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +2

Query: 245 AAKRFCPI*RQ*FD*EVMLQKR---GSSVWCWFTQQEAPPQ 358
           + KRFCP+ R  F  ++   +R   G   WC F Q   P Q
Sbjct: 279 SVKRFCPVGRSFFSPDIKTPQRLGEGLESWCGFYQSIRPTQ 319


>At3g02050.1 68416.m00168 potassium transporter (KUP3) nearly
           identical to potassium transporter KUP3p [Arabidopsis
           thaliana] gi|6742169|gb|AAF19432; similar to tiny root
           hair 1 protein [Arabidopsis thaliana]
           gi|11181958|emb|CAC16137; KUP/HAK/KT Transporter family
           member, PMID:11500563
          Length = 789

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 459 GLLYCEILT-LPCILQHQVQSYPIFHKL 379
           GL+Y E+ T +P I  H V + P FHK+
Sbjct: 533 GLVYSELATGVPAIFSHFVTNLPAFHKV 560


>At4g30740.1 68417.m04356 expressed protein hypothetical protein
           T29E15.27 - Arabidopsis thaliana,PID:g3738334
          Length = 91

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 43  NVNKMPVLQRIKKPTTRKGKKVLLSKEPKPIEGPKQSIFLQGR 171
           +V++ P  +R + P   K     LS+  KP++GP   +  Q R
Sbjct: 49  SVSRKPTPERKRSPLKGKNNVSDLSENSKPVDGPHSRLIEQHR 91


>At2g40850.1 68415.m05043 phosphatidylinositol 3- and 4-kinase
           family protein contains Pfam profile PF00454:
           Phosphatidylinositol 3- and 4-kinase
          Length = 561

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 252 KDFVPFEDS-SLIEKLCYKKEAALFGVGSHSKKRPH 356
           +DF   E+S SL+E LC K +A++FG  S      H
Sbjct: 385 RDFSKGEESFSLLETLCTKAKASVFGKTSEDSDYSH 420


>At1g02380.1 68414.m00184 expressed protein
          Length = 209

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 91  RKGKKVLLSKEPKPIEGPKQSIFLQGRNPSERTRKLLKDIYDLKKPDAAYLSR-KKILSH 267
           +K +K   SK P+P +GP  S         E  RK+++DI +L     A + R KK L  
Sbjct: 84  KKSRKA--SKPPRPPKGPSLS---------ENDRKIMRDIQELAMRKRARIERMKKSLKR 132

Query: 268 LK 273
           LK
Sbjct: 133 LK 134


>At2g30070.1 68415.m03658 potassium transporter (KUP1) identical to
           potassium transporter [Arabidopsis thaliana]
           gi|2654088|gb|AAB87687; KUP/HAK/KT Transporter family
           member, PMID:11500563
          Length = 712

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 459 GLLYCEILT-LPCILQHQVQSYPIFHKL 379
           GL+Y  ++T +P +  H V + P FHK+
Sbjct: 533 GLVYSNLVTGVPAVFGHFVTNLPAFHKI 560


>At1g06450.1 68414.m00683 CCR4-NOT transcription complex protein,
           putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
           transcription complex, subunit 8 (CAF1-like protein,
           CALIFp) [Homo sapiens]
          Length = 360

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 435 TLPCILQHQVQSYPIFH 385
           TLP + Q  V SYP+FH
Sbjct: 272 TLPLMCQQNVASYPVFH 288


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,371,449
Number of Sequences: 28952
Number of extensions: 317736
Number of successful extensions: 722
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)