Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30926
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase |Schizosac...    71   2e-13
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz...    27   3.2  
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S...    25   7.4  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    25   7.4  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   9.8  
SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    25   9.8  

>SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 208

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 40/96 (41%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
 Frame = +3

Query: 279 QNAAVLEILHAAVGLVPSSVFVVLMQVYSRVFLVCGALLATQGATT-SPGLPLCILAWSI 455
           Q  A+ E+ H+  GLV SS    ++QV SR++LV G           SP     I+AWSI
Sbjct: 53  QTLAIAEVFHSIFGLVSSSPLTTIIQVASRLYLVWGVCYPFSYVIEGSPIYLSMIIAWSI 112

Query: 456 TEIIRYAYYALNLVDIVPHR*RF*GIPRFLVMYPLG 563
           TEIIRYA+YA NL   +P    +     FL++YP+G
Sbjct: 113 TEIIRYAFYAFNLNGDIPAFLTWLRYNTFLILYPIG 148


>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 395 GNTRSDYKSRVASVYTRLVDN*NHKI 472
           G T S+Y++R+ S+Y  L D  N K+
Sbjct: 173 GKTGSEYRNRMRSLYMNLKDKNNPKL 198


>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
           S28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
 Frame = -1

Query: 665 FPKPFRALRMVKSFFLERFHP--NEVVHAEQLSQLIPEGIHHEKTWNTSKTSAMRYNIDQ 492
           FP    +L   +  F ER HP    +    QLS L  E IH       S +  +R N  Q
Sbjct: 141 FPSSDTSLESNQDGF-ERLHPLAERLERMSQLSDLRKESIHRIFNIENSNSKTLRLNNKQ 199

Query: 491 I 489
           +
Sbjct: 200 L 200


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 535 HVFS*CIPSGINWESCSACTTSLG*NLSRKKLFTILNARN 654
           H FS    SG+ +  CSAC+  +    +R+K   +L A N
Sbjct: 574 HNFSLMKISGMAYPQCSACSECIINEWNREKWMFVLRAIN 613


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -2

Query: 154  EDKSFQSKVQRCCFSLPCWTLFKLI*NFMFKDIF*TKSFTKSSL 23
            EDK   SK  R  +++P W   K++    F+  +   S   S L
Sbjct: 1182 EDKKTLSKEDRSTYAMPLWFQVKMVMTRNFQSYWREPSILMSKL 1225


>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = +3

Query: 261 WTVIIFQNAAVLEILHAAVGLVPSSVFVVLMQVYSRVFLVCGALLATQGATTSPGLPLCI 440
           W  +IF     L +  +   +   SVF V++ +      VC   +   GA  S    +CI
Sbjct: 94  WGPLIFSLVIALALALSTDKIERESVFTVVVALIWFGEAVCSLNIKLLGANISIFQSMCI 153

Query: 441 LAWS 452
           L +S
Sbjct: 154 LGYS 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,736
Number of Sequences: 5004
Number of extensions: 63840
Number of successful extensions: 202
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)