Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30926
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0338 + 2718212-2718251,2718519-2718607,2718997-2719050,271...    57   1e-08
01_01_0340 + 2727135-2727205,2727470-2727639,2728418-2728506,272...    38   0.007
04_03_0113 + 11388585-11388655,11388741-11388852,11390182-113902...    34   0.088
01_01_0337 + 2717104-2717174,2717266-2717395                           30   1.4  
01_01_0531 - 3892738-3892757,3893083-3893111,3893330-3893355,389...    29   3.3  
01_01_0530 - 3877337-3877396,3877709-3877837,3877954-3878221,387...    29   3.3  
03_06_0661 - 35369687-35369749,35369842-35370040,35370149-353706...    29   4.4  
01_01_0344 + 2751218-2751288,2751793-2751904,2751965-2752012           28   5.8  
04_03_0092 + 11079185-11079589,11081319-11081409,11081507-110816...    28   7.7  

>01_01_0338 +
           2718212-2718251,2718519-2718607,2718997-2719050,
           2719201-2719271,2719375-2719456,2719561-2719657,
           2719752-2719873
          Length = 184

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 2/124 (1%)
 Frame = +3

Query: 291 VLEILHAAVGLVPSSVFVVLMQVYSRVFLVCGALLATQGATTSPGLPLCILAWSITEIIR 470
           V +ILH  VGLV S V   L Q+ SR+FL  G L +     +   +   +++WSITEIIR
Sbjct: 5   VAQILHGLVGLVRSPVSATLPQIGSRLFLTWGILWSFPETHSHILVTSLVISWSITEIIR 64

Query: 471 YAYYAL-NLVDIVPHR*RF*GIPRFLVMYPLGY*LGELLCMYHFIG-MKSFEKKTFHHPQ 644
           Y+++ +       P    +     F+V+YP G    E+  +Y  +  MK+ EK     P 
Sbjct: 65  YSFFGMKETFGFAPSWLLWLRYSTFMVLYPTGI-SSEVGLIYIALPYMKATEKYCLRMPN 123

Query: 645 CPKW 656
             KW
Sbjct: 124 --KW 125


>01_01_0340 +
           2727135-2727205,2727470-2727639,2728418-2728506,
           2729017-2729070,2729310-2729380,2729504-2729585,
           2729678-2729774,2729902-2729972
          Length = 234

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
 Frame = +3

Query: 318 GLVPSSVFVVLMQVYSRVFLVCGALLATQGATTSPGLPLCILAWSITEIIRYAYYAL-NL 494
           GLV S V   L Q+  R+F+  G L +     +   +   ++ W I E+ RY++Y +   
Sbjct: 81  GLVRSPVSSTLPQITGRLFITWGILWSFPETQSYIFVTSLLICWCIIEVTRYSFYGMKES 140

Query: 495 VDIVPHR*RF*GIPRFLVMYPLGY*LGELLCMYHFIG-MKSFEKKTFHHPQCPKW 656
               P    +     F+  +P+G  + E+   Y  +  MK+ EK     P   KW
Sbjct: 141 FGFTPSWLLWLRYSTFIACFPVGV-VSEICLAYTVLPFMKASEKYCLRMPN--KW 192


>04_03_0113 +
           11388585-11388655,11388741-11388852,11390182-11390235,
           11390386-11390456,11390560-11390641,11390741-11390837,
           11390914-11391053
          Length = 208

 Score = 34.3 bits (75), Expect = 0.088
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
 Frame = +3

Query: 438 ILAWSITEIIRYAYYAL-NLVDIVPHR*RF*GIPRFLVMYPLGY*LGELLCMYHFIG-MK 611
           +++WSITEIIRY+++ +       P    +     F+V+YP G    E+  +Y  +  MK
Sbjct: 72  VISWSITEIIRYSFFGMKEAFGFAPSWLLWLRYSTFMVLYPTGI-SSEVGLIYIALPYMK 130

Query: 612 SFEKKTFHHPQCPKW 656
           + EK     P   KW
Sbjct: 131 ASEKYCLRMPN--KW 143



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 127 GLSIGKIYLLVYNAAQTLGWSYMLWQSLVHFLNRG 231
           G ++ ++YL VYN A   GW+ +L+ ++   L  G
Sbjct: 5   GSAVRRLYLSVYNWAVFFGWAQVLYYAVTTLLESG 39


>01_01_0337 + 2717104-2717174,2717266-2717395
          Length = 66

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 127 GLSIGKIYLLVYNAAQTLGWSYMLWQSLVHFLNRG 231
           G ++ ++YL VYN A   GW+ +L+ ++   L  G
Sbjct: 5   GSAVRRLYLSVYNWAVFFGWAQVLYYAVTTLLESG 39


>01_01_0531 -
           3892738-3892757,3893083-3893111,3893330-3893355,
           3893639-3893767,3893884-3894151,3894355-3894694,
           3894925-3895045,3895135-3895230,3895604-3895777,
           3895902-3896068,3896675-3896840,3896915-3897053,
           3897135-3897327,3897442-3897524,3897850-3897881
          Length = 660

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 665 FPKPFRALRMVKSFFLERF-HPNEVVHAEQLSQLIPEGIHHEKT 537
           FP PF  + +++   L +F  PN++   +       EG+HH+ T
Sbjct: 549 FPLPFFLMILIRQHVLPKFFEPNDLRELDAAEYEELEGVHHDHT 592


>01_01_0530 -
           3877337-3877396,3877709-3877837,3877954-3878221,
           3878385-3878776,3879003-3879119,3879209-3879304,
           3879775-3879948,3880077-3880243,3880800-3880965,
           3881040-3881178,3881767-3881901,3882157-3882161
          Length = 615

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 665 FPKPFRALRMVKSFFLERF-HPNEVVHAEQLSQLIPEGIHHEKT 537
           FP PF  + +++   L +F  PN++   +       EG+HH+ T
Sbjct: 509 FPLPFFLMILIRQHVLPKFFEPNDLRELDAAEYEELEGVHHDHT 552


>03_06_0661 -
           35369687-35369749,35369842-35370040,35370149-35370641,
           35372982-35373126
          Length = 299

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 427 NPGLVVAPCVASKAPH-TRNTLEYTC 353
           +PG + APC     PH TR  +++TC
Sbjct: 208 SPGGISAPCKVEYGPHITRREIQFTC 233


>01_01_0344 + 2751218-2751288,2751793-2751904,2751965-2752012
          Length = 76

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 109 MKSNTSGLSIGKIYLLVYNAAQTLGWSYMLWQSLVHFLNRG 231
           M  N SG  + ++YL +YN    +GW  + W  ++  L  G
Sbjct: 1   MAGNASG--VRRLYLSLYNWIVFIGWVQVSWFMILALLKNG 39


>04_03_0092 +
           11079185-11079589,11081319-11081409,11081507-11081612,
           11081694-11081976,11082062-11082210,11083582-11083735,
           11083837-11084793
          Length = 714

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 247 KKHPKYHGSKNVLMTAIACKTIQEFERRYRQEDKSFQS 134
           K+H  +H  +   + A   K I E+E++YRQE    +S
Sbjct: 344 KRHWSHHIDEGASLEAEWNKKIVEYEKKYRQEAAELKS 381


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,899,655
Number of Sequences: 37544
Number of extensions: 368609
Number of successful extensions: 924
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)