Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30926
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1015| Best HMM Match : Extensin_2 (HMM E-Value=0.11)                29   4.5  
SB_17966| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43)               28   7.9  

>SB_1015| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
          Length = 828

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -1

Query: 575 SQLIPEGIHHEKTWNTSKTSAMRYNIDQIESVVGISYDFSYRPGEYTQRQPWTC 414
           S L PE IH  +     K++ + YN   +E V  +  D +     Y   +P TC
Sbjct: 175 SLLSPEDIHKRQK-ERCKSAPLPYNFSAVELVTKVPSDGNEHDKLYAMTRPLTC 227


>SB_17966| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -2

Query: 409 APCVASKAPHTRNTLEY-TCIRTTNTLDGTKPTAACKISNTAAF*NIMTVHLIHSKKH 239
           A C  + A  +    ++ TC   T T   TKP  A   +NTA   N    H++ ++++
Sbjct: 11  ATCCTNTATSSNTKRQHATCRTNTATSSNTKPQHATCCTNTATSSNTKQQHVVQTQQY 68


>SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43)
          Length = 511

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 491 IESVVGISYDFSYRPGEYT 435
           IES+  + YD S RPGE T
Sbjct: 395 IESITNLGYDLSDRPGELT 413


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,265,047
Number of Sequences: 59808
Number of extensions: 452284
Number of successful extensions: 1306
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)