Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30926
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022985-14|AAB69975.2|  218|Caenorhabditis elegans Hypothetical...    91   6e-19
Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AF101307-3|AAC69212.2|  315|Caenorhabditis elegans Hypothetical ...    28   5.2  
AC024881-5|AAK71415.1|  668|Caenorhabditis elegans Na/ca exchang...    28   5.2  
Z81542-5|CAB04420.2|  433|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AL034489-8|CAI79278.1|   67|Caenorhabditis elegans Hypothetical ...    28   6.8  

>AF022985-14|AAB69975.2|  218|Caenorhabditis elegans Hypothetical
           protein T15B7.2 protein.
          Length = 218

 Score = 91.1 bits (216), Expect = 6e-19
 Identities = 52/116 (44%), Positives = 74/116 (63%), Gaps = 1/116 (0%)
 Frame = +3

Query: 249 E*IKWTVIIFQNAAVLEILHAAVGLVPSSVFVVLMQVYSRVFLVCGALLATQGATTSPGL 428
           E +++ + IFQ AA+LE++HA VGLV S V    MQV SRV LV   L     A  S G+
Sbjct: 40  ESVEFELKIFQTAAILEVIHAIVGLVRSPVGTTAMQVTSRVVLVWPILHLCSTARFSIGV 99

Query: 429 PLCILAWSITEIIRYAYYALN-LVDIVPHR*RF*GIPRFLVMYPLGY*LGELLCMY 593
           PL ++AWS+TE+IRY++YAL+ L   +P+   +     F V+YP+G   GELL ++
Sbjct: 100 PLLLVAWSVTEVIRYSFYALSVLKQPIPYFLLYLRYTLFYVLYPMGV-SGELLTLF 154



 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 148 YLLVYNAAQTLGWSYMLWQSLVHFLN 225
           YL+ YN  Q LGWS +L ++++   N
Sbjct: 6   YLVAYNVLQILGWSAILVKTVLGLAN 31


>Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical
           protein C49C3.13 protein.
          Length = 499

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
 Frame = -2

Query: 394 SKAPHTRNTLEYTC-----IRTTNTLDGTKPTAACKISNT 290
           S APH +    YTC     + TT+T+  TKPT       T
Sbjct: 232 STAPHIKYDTSYTCASTTTVSTTSTVTTTKPTTTTTTPTT 271


>AF101307-3|AAC69212.2|  315|Caenorhabditis elegans Hypothetical
           protein F41H8.2 protein.
          Length = 315

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = -3

Query: 195 HVRPSKSLSGVIDKKINLSNRKSRGVAFH 109
           +VRP K +S +I KKI+ ++ +S G+A+H
Sbjct: 288 NVRPKKKVSSIIVKKISTAHTQS-GLAWH 315


>AC024881-5|AAK71415.1|  668|Caenorhabditis elegans Na/ca exchangers
           protein 10 protein.
          Length = 668

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 548 HEKTWNTSKTSAMRYNIDQIESVVGISYDFSY 453
           HEK  N  K SAM ++  +I + +G   D+++
Sbjct: 266 HEKIENARKESAMNHHTHKISTFIGFFMDYAH 297


>Z81542-5|CAB04420.2|  433|Caenorhabditis elegans Hypothetical
           protein F49A5.8 protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = +2

Query: 380 MWSFTGNTRSDYKSRVASVYT-RLVDN*NH-KICLLRSQSGRYCTSSLTFLRYSTFSRDV 553
           ++ F  +   + +  VA  YT RL ++ +H  +C+L S   R    SL    + T SR +
Sbjct: 352 LYIFEKDEMQNMRILVAVCYTLRLFNSMSHILVCVLMSSQYRDTVKSLVL--WKTISRFL 409

Query: 554 SPRVLTGRA 580
             R+L G+A
Sbjct: 410 KDRILKGKA 418


>AL034489-8|CAI79278.1|   67|Caenorhabditis elegans Hypothetical
           protein Y7A5A.10 protein.
          Length = 67

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = -2

Query: 565 YPRGYITRKRGIPQKRQR*GTISTRLRA 482
           YPRG    K G  Q  QR G I   LRA
Sbjct: 19  YPRGGTAPKNGASQTLQRAGAIEAELRA 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,918,416
Number of Sequences: 27780
Number of extensions: 342848
Number of successful extensions: 944
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)