Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30926
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    25   0.65 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   0.86 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   1.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.5  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   4.6  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   6.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.0  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 578 LSQLIPEGIHHEKTWNTSKTSAMRYNIDQIESV 480
           +S L  + IH+   +N      + YNI+ IE +
Sbjct: 304 ISSLSNKTIHNNNNYNNYNNKKLYYNINYIEQI 336


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +3

Query: 33  LVKDFV*KISLNIKFYINLNNVQQGNEKQHLWTFDWKDL 149
           LVK+ + K+ + +  ++   N  Q +  Q  W ++WK+L
Sbjct: 600 LVKNIIPKLQIALSEFVI--NPHQQHLDQWNWVYEWKEL 636


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +2

Query: 509 SSLTFLRYSTFSRDVSPRVLTGRAALHVPLHW 604
           +++ + RYST +R +  ++  G+  L + L W
Sbjct: 139 AAIAYDRYSTIARPLDGKLSRGQVILFIVLIW 170


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 118 NTSGLSIGKIYLLVYNAAQTLGWSYMLWQSLVHFL 222
           NTS +S+ K      + +  +GWS  L  SLV+ +
Sbjct: 377 NTSLVSLDKKQYTWRHTSVLIGWSAFLCISLVYII 411


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/42 (21%), Positives = 20/42 (47%)
 Frame = -1

Query: 578 LSQLIPEGIHHEKTWNTSKTSAMRYNIDQIESVVGISYDFSY 453
           +S L  + IH+   +N +  +   YN +   +   + Y+ +Y
Sbjct: 82  ISSLSNKTIHNNNNYNNNNYNNYNYNNNNYNNYKKLYYNINY 123


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 361 IQECFWYVELYWQHKERLQVQ 423
           IQ C  Y+E +  HK++L+++
Sbjct: 127 IQICPIYIESFSYHKQKLRLR 147


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +1

Query: 175 TLGWSYMLWQSLVHFLNRGTLDAFWSESSGLSLY 276
           T G  ++ W+  +   +   LDA WS ++G+ ++
Sbjct: 383 TRGDLWISWEEGMKVFDELLLDADWSVNAGMWMW 416


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,966
Number of Sequences: 438
Number of extensions: 4433
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)