Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30926
         (665 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10480.1 68418.m01214 protein tyrosine phosphatase-like prote...    65   5e-11
At5g59770.1 68418.m07491 expressed protein                             51   6e-07
At1g51340.2 68414.m05773 MATE efflux family protein contains Pfa...    29   2.1  
At1g51340.1 68414.m05774 MATE efflux family protein contains Pfa...    29   2.1  
At4g20060.1 68417.m02935 expressed protein  ; expression support...    28   4.9  
At5g52170.1 68418.m06476 homeobox-leucine zipper family protein ...    27   8.5  
At1g09880.1 68414.m01112 hypothetical protein                          27   8.5  

>At5g10480.1 68418.m01214 protein tyrosine phosphatase-like protein,
           putative (PAS2) identical to PEPINO/PASTICCINO2 protein
           GI:24411193, GI:24575153 from [Arabidopsis thaliana];
           contains Pfam:04387: protein tyrosine phosphatase-like
           protein
          Length = 221

 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 43/120 (35%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
 Frame = +3

Query: 207 ISTFFEPWYFGCFLE*IKWTVIIFQNAAVLEILHAAVGLVPSSVFVVLMQVYSRVFLVCG 386
           I+T  E  Y   + + I+  + + Q AAVLEILH  VGLV S V   L Q+ SR+FL  G
Sbjct: 32  ITTLKETGYENVY-DAIEKPLQLAQTAAVLEILHGLVGLVRSPVSATLPQIGSRLFLTWG 90

Query: 387 ALLATQGATTSPGLPLCILAWSITEIIRYAYYAL-NLVDIVPHR*RF*GIPRFLVMYPLG 563
            L +     +   +   +++WSITEIIRY+++     +   P    +     FL++YP G
Sbjct: 91  ILYSFPEVRSHFLVTSLVISWSITEIIRYSFFGFKEALGFAPSWHLWLRYSSFLLLYPTG 150


>At5g59770.1 68418.m07491 expressed protein
          Length = 199

 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 26/71 (36%), Positives = 38/71 (53%)
 Frame = +3

Query: 267 VIIFQNAAVLEILHAAVGLVPSSVFVVLMQVYSRVFLVCGALLATQGATTSPGLPLCILA 446
           + +FQ AA+LE+LH A+G+VPS     LMQ   R   +    +  Q    SP L + ++A
Sbjct: 99  ISLFQTAAILEVLHGAIGIVPSGFLSPLMQWSGRTHFILA--IVGQIKEDSPWLSITLVA 156

Query: 447 WSITEIIRYAY 479
           W I E +   Y
Sbjct: 157 WCIGEAVLLVY 167


>At1g51340.2 68414.m05773 MATE efflux family protein contains Pfam
           profile PF01554: MatE
          Length = 515

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 339 FVVLMQVYSRVFLVC--GALLATQGATTSPGLPLCILAWSITEIIRYAY 479
           F++LM+V +  F V    +L A +G+T+     +C+  W  T ++   Y
Sbjct: 313 FLLLMRVIAVTFCVTLSASLAAREGSTSMAAFQVCLQVWLATSLLADGY 361


>At1g51340.1 68414.m05774 MATE efflux family protein contains Pfam
           profile PF01554: MatE
          Length = 509

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 339 FVVLMQVYSRVFLVC--GALLATQGATTSPGLPLCILAWSITEIIRYAY 479
           F++LM+V +  F V    +L A +G+T+     +C+  W  T ++   Y
Sbjct: 307 FLLLMRVIAVTFCVTLSASLAAREGSTSMAAFQVCLQVWLATSLLADGY 355


>At4g20060.1 68417.m02935 expressed protein  ; expression supported
           by MPSS
          Length = 1134

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = +2

Query: 419 SRVASVYTRLVDN*NHKICLLRSQSGRYCTSSLTFLRYSTFSRDVSPRVLTGRAAL 586
           +RV +VY +  D  +  + L+     R   S    +RY  FS  VSP  L GR+AL
Sbjct: 126 TRVKNVYDK-GDTESKALALILFGCWRDFASEFAPVRYLVFSSMVSPHDLEGRSAL 180


>At5g52170.1 68418.m06476 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           Anthocyaninless2 (ANL2) (GP:5702094) [Arabidopsis
           thaliana];  contains Pfam PF00046: Homeobox domain and
           Pfam PF01852: START domain
          Length = 682

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = -1

Query: 644 LRMVKSFFLERFHPNEVVHAEQLSQLIPEGIHHEKTWNTSKTSAMRYNIDQIESVV 477
           ++ ++SFF E  HPNE    E   +L  E     K W  ++ + M+  +++ E+V+
Sbjct: 69  IQELESFFKECPHPNEKQRLELGKKLTLES-KQIKFWFQNRRTQMKTQLERHENVI 123


>At1g09880.1 68414.m01112 hypothetical protein
          Length = 631

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 542 KTWNTSKTSAMRYNIDQ 492
           +TWNTS T+A+  NID+
Sbjct: 84  RTWNTSSTTAVPVNIDK 100


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,937,009
Number of Sequences: 28952
Number of extensions: 315066
Number of successful extensions: 781
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)