Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30924
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    27   3.4  
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             26   5.9  
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.9  

>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 184 HCPNCAISIYTGLMQFTN 237
           H PNC +S+Y  +  FT+
Sbjct: 226 HIPNCLLSLYNSIFAFTS 243


>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +1

Query: 199 AISIYTGLMQFTNIIDTDKRFT 264
           A+ I+ G+++FT ++  ++RFT
Sbjct: 237 ALDIFGGVLEFTRVVAWNRRFT 258


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 584 QKQFLNSRAIWTLSFICTF 640
           +K FLN     TLSFIC F
Sbjct: 246 EKMFLNPDCALTLSFICIF 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,978,033
Number of Sequences: 5004
Number of extensions: 63350
Number of successful extensions: 154
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)