Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30924
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0935 - 29509135-29511732                                         31   0.86 
02_05_0300 + 27681204-27681656,27681745-27681840,27681933-276820...    31   0.86 
03_02_0791 + 11222291-11224237                                         28   8.0  

>04_04_0935 - 29509135-29511732
          Length = 865

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +3

Query: 108 NSMPLRNPIEVSTSLLKSCDVYGLGPLSQLCHKHIHRFNA 227
           + MP++   EV  +LL +C ++G   L++L  KH+   ++
Sbjct: 665 DKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDS 704


>02_05_0300 +
           27681204-27681656,27681745-27681840,27681933-27682022,
           27682126-27682227,27682310-27682456,27683608-27683748,
           27683749-27683808,27685133-27685230,27685308-27685410,
           27685954-27686037
          Length = 457

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 310 QEEGKLDNPQSENAALTVTGQYAYVAP-DGKHYTVTFTAGPNGFQPKTSL 456
           Q E  L  P  +  AL V  +  + A  DG+     F+A  NGF+P  SL
Sbjct: 220 QAEMNLTGPTGQVYALAVGNELLFAATQDGRILAWRFSAATNGFEPAASL 269


>03_02_0791 + 11222291-11224237
          Length = 648

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +2

Query: 227 NSLISSILTNVLHKSFYAGTKLVTVHPDKRKVNWTT 334
           NS+I+  L N   K      +L TV PDK  V+WTT
Sbjct: 336 NSMIAGYLKNGSVKD---AKELFTVMPDKDNVSWTT 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,396,215
Number of Sequences: 37544
Number of extensions: 389295
Number of successful extensions: 944
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)