Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30924
(687 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X89223-1|CAA61507.1| 582|Caenorhabditis elegans sli-1 protein. 29 2.4
U58730-5|AAK84546.1| 582|Caenorhabditis elegans Suppressor of l... 29 2.4
U58730-4|AAK84547.1| 565|Caenorhabditis elegans Suppressor of l... 29 2.4
U58730-3|AAT92069.1| 523|Caenorhabditis elegans Suppressor of l... 29 2.4
AF304119-1|AAG50232.1| 326|Caenorhabditis elegans seven transme... 28 5.4
AF068718-6|AAC17769.2| 326|Caenorhabditis elegans Hypothetical ... 28 5.4
Z48007-1|CAA88052.1| 1140|Caenorhabditis elegans Hypothetical pr... 27 9.5
AF025468-5|AAB71042.1| 390|Caenorhabditis elegans Hypothetical ... 27 9.5
>X89223-1|CAA61507.1| 582|Caenorhabditis elegans sli-1 protein.
Length = 582
Score = 29.5 bits (63), Expect = 2.4
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Frame = +1
Query: 175 GSDHCPNCAISIYTGLMQ-FTNIIDTDKRFT*VF--LCRYETSDGTSRQEEGKLDNPQSE 345
G D N ++T L F +I + T C + T D ++ E P S
Sbjct: 241 GDDFISNFEFDVFTRLFYPFKTLIKNWQTLTTAHPGYCAFLTYDEVKKRLEKLTKKPGSY 300
Query: 346 NAALTVT--GQYA--YVAPDGKHY 405
L+ T GQ+A YVAPDGK Y
Sbjct: 301 IFRLSCTRPGQWAIGYVAPDGKIY 324
>U58730-5|AAK84546.1| 582|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform a protein.
Length = 582
Score = 29.5 bits (63), Expect = 2.4
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Frame = +1
Query: 175 GSDHCPNCAISIYTGLMQ-FTNIIDTDKRFT*VF--LCRYETSDGTSRQEEGKLDNPQSE 345
G D N ++T L F +I + T C + T D ++ E P S
Sbjct: 241 GDDFISNFEFDVFTRLFYPFKTLIKNWQTLTTAHPGYCAFLTYDEVKKRLEKLTKKPGSY 300
Query: 346 NAALTVT--GQYA--YVAPDGKHY 405
L+ T GQ+A YVAPDGK Y
Sbjct: 301 IFRLSCTRPGQWAIGYVAPDGKIY 324
>U58730-4|AAK84547.1| 565|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform b protein.
Length = 565
Score = 29.5 bits (63), Expect = 2.4
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Frame = +1
Query: 175 GSDHCPNCAISIYTGLMQ-FTNIIDTDKRFT*VF--LCRYETSDGTSRQEEGKLDNPQSE 345
G D N ++T L F +I + T C + T D ++ E P S
Sbjct: 224 GDDFISNFEFDVFTRLFYPFKTLIKNWQTLTTAHPGYCAFLTYDEVKKRLEKLTKKPGSY 283
Query: 346 NAALTVT--GQYA--YVAPDGKHY 405
L+ T GQ+A YVAPDGK Y
Sbjct: 284 IFRLSCTRPGQWAIGYVAPDGKIY 307
>U58730-3|AAT92069.1| 523|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform c protein.
Length = 523
Score = 29.5 bits (63), Expect = 2.4
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Frame = +1
Query: 175 GSDHCPNCAISIYTGLMQ-FTNIIDTDKRFT*VF--LCRYETSDGTSRQEEGKLDNPQSE 345
G D N ++T L F +I + T C + T D ++ E P S
Sbjct: 224 GDDFISNFEFDVFTRLFYPFKTLIKNWQTLTTAHPGYCAFLTYDEVKKRLEKLTKKPGSY 283
Query: 346 NAALTVT--GQYA--YVAPDGKHY 405
L+ T GQ+A YVAPDGK Y
Sbjct: 284 IFRLSCTRPGQWAIGYVAPDGKIY 307
>AF304119-1|AAG50232.1| 326|Caenorhabditis elegans seven
transmembrane protein protein.
Length = 326
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -1
Query: 393 VRSYVSILSSNCQSCILGLWVV--QFTFLLSGCTVT 292
V Y+ ++ N +C++ + + +FTF L+GC+ T
Sbjct: 106 VSEYLCVILENVIACVIAVLIYPPRFTFFLNGCSKT 141
>AF068718-6|AAC17769.2| 326|Caenorhabditis elegans Hypothetical
protein R01B10.5 protein.
Length = 326
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -1
Query: 393 VRSYVSILSSNCQSCILGLWVV--QFTFLLSGCTVT 292
V Y+ ++ N +C++ + + +FTF L+GC+ T
Sbjct: 106 VSEYLCVILENVIACVIAVLIYPPRFTFFLNGCSKT 141
>Z48007-1|CAA88052.1| 1140|Caenorhabditis elegans Hypothetical protein
R134.1 protein.
Length = 1140
Score = 27.5 bits (58), Expect = 9.5
Identities = 21/48 (43%), Positives = 23/48 (47%)
Frame = -1
Query: 333 VVQFTFLLSGCTVTSFVPA*KDLCKTFVSIDDISELH*TGVYAYGTIG 190
VV+FT L S CT V DL F D I E H GVY +IG
Sbjct: 903 VVKFTILASKCTPFQVVNLLNDLYSNF---DTIIEEH--GVYKVESIG 945
>AF025468-5|AAB71042.1| 390|Caenorhabditis elegans Hypothetical
protein T27A1.4 protein.
Length = 390
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +3
Query: 108 NSMPLRNPIEVSTSLLK 158
NS PL NPIEVS LLK
Sbjct: 189 NSPPLVNPIEVSQDLLK 205
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,475,227
Number of Sequences: 27780
Number of extensions: 360981
Number of successful extensions: 805
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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