Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30924
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    47   1e-07
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   4.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.3  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   8.3  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 47.2 bits (107), Expect = 1e-07
 Identities = 22/61 (36%), Positives = 36/61 (59%)
 Frame = +1

Query: 271 FLCRYETSDGTSRQEEGKLDNPQSENAALTVTGQYAYVAPDGKHYTVTFTAGPNGFQPKT 450
           ++  +ETS+G S QE G+     +E   ++  G  +Y APDG+  ++T+ A  NGFQ + 
Sbjct: 42  YINNFETSNGISHQESGQPKQVDNETPVVS-QGSDSYTAPDGQQVSITYVADENGFQVQG 100

Query: 451 S 453
           S
Sbjct: 101 S 101


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 86  YTWCLVLELHAVTQSN*GFDLITQEL 163
           YT C++  L      N  FD+I ++L
Sbjct: 68  YTTCIMKLLRTFKNGNFDFDMIVKQL 93


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 623 SFICTFFLINQNVNYE 670
           S IC  + +N++V+YE
Sbjct: 383 SLICDVYGVNESVSYE 398


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 604 SCHMDTIFYLYFFFN 648
           SC M  I YL F FN
Sbjct: 2   SCGMGMIKYLLFIFN 16


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,540
Number of Sequences: 438
Number of extensions: 4425
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)