Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30924
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21690.1 68416.m02734 MATE efflux family protein similar to r...    27   8.8  
At1g68560.1 68414.m07833 alpha-xylosidase (XYL1) identical to al...    27   8.8  
At1g28690.1 68414.m03533 pentatricopeptide (PPR) repeat-containi...    27   8.8  

>At3g21690.1 68416.m02734 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile: PF01554
           MatE uncharacterized membrane protein family
          Length = 506

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -1

Query: 513 YVRRSIIYVHRFLGFLLLAQRGFGLEAVGSRCESDSVVLAVRSYVSILSS-NCQSCILGL 337
           Y+  + ++VH  L +L + + G GL            ++ V  +V I++S  C+    G 
Sbjct: 207 YISTATLFVHLLLSWLAVYKLGMGLLGASLVLSLSWWIIVVAQFVYIVTSERCRETWRGF 266

Query: 336 WVVQFTFLLS 307
            V  F+ L S
Sbjct: 267 SVQAFSGLWS 276


>At1g68560.1 68414.m07833 alpha-xylosidase (XYL1) identical to
           alpha-xylosidase precursor GB:AAD05539 GI:4163997 from
           [Arabidopsis thaliana]; contains Pfam profile PF01055:
           Glycosyl hydrolases family 31; identical to cDNA
           alpha-xylosidase precursor (XYL1) partial cds GI:4163996
          Length = 915

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 132 IEVSTSLLKSCDVYGLGPLSQ 194
           +E+STSL K   +YGLG  SQ
Sbjct: 165 LEISTSLPKEASLYGLGENSQ 185


>At1g28690.1 68414.m03533 pentatricopeptide (PPR) repeat-containing
           protein contains six TIGRFAM TIGR00756:
           pentatricopeptide repeat domains;  contains five Pfam
           PF01535: PPR repeats
          Length = 520

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 102 FWNSMPLRNPIEVSTSLLKSCDVYGLGPLSQLCHKHIHRFNA 227
           F  +MP R   ++  +LL SC+++G   L+ +    + + NA
Sbjct: 432 FARAMPERPDSDIWAALLSSCNLHGNVELASIAASELFKLNA 473


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,300,372
Number of Sequences: 28952
Number of extensions: 327998
Number of successful extensions: 747
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)