Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30922
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    51   2e-07
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    28   1.2  
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    28   1.2  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.6  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    28   1.6  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    25   8.5  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    25   8.5  

>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 46/141 (32%), Positives = 67/141 (47%), Gaps = 11/141 (7%)
 Frame = +2

Query: 248 GRPYIF--VDILDFKGLQKIVVDHRVDWLIHFSGLLSAIGEQ-NVPLA-VRVNIEGMHNV 415
           G+  IF  VD+LD   L K+  +  +  +IHF+G L A+GE   VPL+  + NI G  N+
Sbjct: 55  GKKVIFHQVDLLDEPALDKVFANQNISAVIHFAG-LKAVGESVQVPLSYYKNNISGTINL 113

Query: 416 IELAKQYKLXIFV-PSTIGAFG-PDSPRNPTPN*QS---QGREQYTGCPKFTRSC*ESTI 580
           IE  K+Y +  FV  S+   +G P  P    P  +S   +G   Y     F  +  E   
Sbjct: 114 IECMKKYNVRDFVFSSSATVYGDPTRPGGTIPIPESCPREGTSPYGRTKLFIENIIEDET 173

Query: 581 IIKFGLDFRCLRF--PGSNIP 637
            +   L+   LR+  PG   P
Sbjct: 174 KVNKSLNAALLRYFNPGGAHP 194


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
 Frame = +2

Query: 266 VDILDFKGLQKIVVDHRVDWLIHFSGLLSAIGE-QNVPLA-VRVNIEGMHNVIELAKQYK 439
           +D+ D +GL +I    ++  +IHF+  L A+GE   +PL     NI G   ++ + ++++
Sbjct: 62  LDLRDKEGLAQIFDTFKIKGVIHFAA-LKAVGESMKLPLEYYDNNICGTITLLNVMREHR 120

Query: 440 LXIFVPSTIGAFGPDSPR 493
           +   V S+      D+ R
Sbjct: 121 VKTVVFSSSATVYGDATR 138


>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 374 PLAVRVNIEGMHNVIELAKQYKLXIFVPSTIGAFGPDSPRN-PTPN*QSQG 523
           PL          NV+   + Y +  +  +++G + P++P N P PN +  G
Sbjct: 382 PLLTPYEASAAFNVVPWKEVYPMDFYATNSLGNWTPNNPENRPLPNRKKTG 432


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 192 GQNNVILSDIIKPTEEIVKDGLTFS 266
           G  N+  + I+KPT+EI+  G  +S
Sbjct: 394 GDTNMTTNTILKPTDEIINKGYAYS 418


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 226 LIMSDSMTLFWPYFPRRYLAHSTPNWPSLR*SKFSEVF 113
           L+ S   TL WP F R+Y   ST   P      F ++F
Sbjct: 313 LLHSLPSTLLWPQFKRKYRKSSTLQIPGYSERDFEKLF 350


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -3

Query: 310 IYYDFLKSFEVKYIDENVRPSLTISSVGLIMSDSMTLFWPYFPRRYLA 167
           +Y   +      + D  +   L+     L+++  M LF+ +FP +YLA
Sbjct: 97  VYLTMILLTNYMHFDAIIVDQLSTCVPFLLLASQMILFYCHFPDKYLA 144


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 650 WRALPDYAIAILPWT 694
           W   PD AIA+ PWT
Sbjct: 284 WSKQPDNAIAMAPWT 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,194,634
Number of Sequences: 5004
Number of extensions: 71016
Number of successful extensions: 181
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)