Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30922
(735 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0471 - 17563245-17563488,17563564-17563655,17563941-175640... 36 0.033
09_02_0435 - 9384225-9384412,9385084-9385133,9385209-9385274,938... 34 0.13
06_03_0668 + 23301578-23301791,23302102-23302199,23302233-233023... 30 2.2
01_07_0323 - 42728636-42728746,42729979-42730188 29 2.9
02_05_0442 - 29044736-29046604 29 5.1
05_07_0344 + 29411767-29411961,29412692-29412741,29413295-294134... 28 6.7
03_05_0481 + 24764283-24766109 28 6.7
02_04_0622 - 24508508-24508666,24509533-24509634,24510108-245101... 28 6.7
12_02_1124 + 26301884-26303725 28 8.8
04_04_0451 - 25323178-25323241,25323614-25323741,25324533-253246... 28 8.8
>08_02_0471 -
17563245-17563488,17563564-17563655,17563941-17564023,
17564418-17564499,17565234-17565461,17565553-17565654,
17565818-17565953,17566080-17566129,17566465-17566572,
17568702-17568911
Length = 444
Score = 35.9 bits (79), Expect = 0.033
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Frame = +2
Query: 266 VDILDFKGLQKIVVDHRVDWLIHFSGLLSAIGE--QNVPLAVRVNIEGMHNVIELAKQY- 436
VD+ D L+K+ R D ++HF+G L A+GE Q L N+ G N++E+ +
Sbjct: 107 VDLRDKGALEKVFASTRFDAVVHFAG-LKAVGESVQKPLLYYDNNVNGTVNLLEVMSAHG 165
Query: 437 -KLXIFVPSTIGAFGPDSPRN 496
K +F S+ +G SP+N
Sbjct: 166 CKKLVF-SSSAAVYG--SPKN 183
>09_02_0435 -
9384225-9384412,9385084-9385133,9385209-9385274,
9385360-9385451,9385893-9385975,9386181-9386259,
9386888-9387115,9387196-9387297,9387719-9387854,
9387984-9388033,9389391-9389618
Length = 433
Score = 33.9 bits (74), Expect = 0.13
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Frame = +2
Query: 266 VDILDFKGLQKIVVDHRVDWLIHFSGLLSAIGE--QNVPLAVRVNIEGMHNVIEL--AKQ 433
VDI D GL+K+ R D ++HF+G L A+GE Q L N+ G ++E+ A
Sbjct: 77 VDIRDKGGLEKVFSSTRFDAVVHFAG-LKAVGESVQKPLLYYDHNVAGTIILLEVMAAHG 135
Query: 434 YKLXIFVPSTIGAFGPDSPRN 496
K +F S+ +G SP+N
Sbjct: 136 CKKLVF-SSSAAVYG--SPKN 153
>06_03_0668 +
23301578-23301791,23302102-23302199,23302233-23302301,
23302674-23302961,23303045-23303208,23303344-23303599,
23303706-23303816,23304109-23304195,23305916-23305985,
23306093-23306149,23306309-23306426,23307314-23307403,
23307492-23307671,23307816-23307893,23308016-23308088
Length = 650
Score = 29.9 bits (64), Expect = 2.2
Identities = 23/73 (31%), Positives = 36/73 (49%)
Frame = +2
Query: 269 DILDFKGLQKIVVDHRVDWLIHFSGLLSAIGEQNVPLAVRVNIEGMHNVIELAKQYKLXI 448
+++ G K++V V +H S L IGE N+ L V+ EG + V+++ K +
Sbjct: 91 EVVKVMGKSKVLVKCCVLVFVHMSVALEIIGEDNILL---VHPEGKY-VVDVDKSIDITK 146
Query: 449 FVPSTIGAFGPDS 487
PST A DS
Sbjct: 147 LSPSTRVALRNDS 159
>01_07_0323 - 42728636-42728746,42729979-42730188
Length = 106
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 559 PRELWTPRILFAALGLLIWRWISWRIRTERSNRTRNKYP 443
PR LW L A + +L W W+ W+ ER + + P
Sbjct: 65 PRNLWQVYALGAFI-VLRWAWVKWKESKERDDSPDGRSP 102
>02_05_0442 - 29044736-29046604
Length = 622
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +2
Query: 326 LIHFSGLLSAIGEQNVPLAVRVN 394
L +F+G L A+GE ++P AVRV+
Sbjct: 268 LAYFAGRLYALGESDLPYAVRVH 290
>05_07_0344 +
29411767-29411961,29412692-29412741,29413295-29413430,
29413931-29414032,29414153-29414380,29414460-29414544,
29414648-29414730,29414854-29414945,29415048-29415141
Length = 354
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 266 VDILDFKGLQKIVVDHRVDWLIHFSGLLSAIGE 364
VD+ D + L +I R + +IHF+G L A+GE
Sbjct: 66 VDLRDKQALDQIFSSQRFEAVIHFAG-LKAVGE 97
>03_05_0481 + 24764283-24766109
Length = 608
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 326 LIHFSGLLSAIGEQNVPLAVRVNIEG 403
LI+F+G L A+ E ++P VRV +G
Sbjct: 257 LIYFNGRLLAMSEDDLPYQVRVTADG 282
>02_04_0622 -
24508508-24508666,24509533-24509634,24510108-24510176,
24510294-24510362,24510428-24510502,24510584-24510688,
24511309-24511407,24511521-24513230,24513489-24513788,
24514748-24514846,24514962-24515079,24515166-24515251,
24515334-24515402,24515746-24515843,24516373-24516534,
24516779-24516787,24516970-24516991,24517620-24517712,
24517872-24517940,24518720-24518782,24518882-24519037,
24520895-24521230
Length = 1355
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 571 LLTTPRELWTPRILFAALGLLIWRWISWRIRTE 473
LL T E+ +P I+ G W SWR+R E
Sbjct: 106 LLVTLMEVSSPTIIVERAGSYAWTHKSWRVREE 138
>12_02_1124 + 26301884-26303725
Length = 613
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 326 LIHFSGLLSAIGEQNVPLAVRVNIEG 403
L++F+G L A+ E ++P VRV +G
Sbjct: 259 LVYFNGRLLAMSEDDLPYQVRVTADG 284
>04_04_0451 -
25323178-25323241,25323614-25323741,25324533-25324634,
25325314-25325382,25325489-25325557,25325646-25325720,
25325805-25325909,25326394-25326492,25326626-25328344,
25328629-25328931,25329031-25329129,25329733-25329850,
25329933-25330018,25330091-25330159,25330232-25330306,
25330675-25330772,25331271-25331432,25332391-25332556,
25332902-25332970,25333064-25333126,25333221-25333376,
25334027-25334365
Length = 1410
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 571 LLTTPRELWTPRILFAALGLLIWRWISWRIRTE 473
LL T E+ +P I+ G W SWR+R E
Sbjct: 107 LLITLMEVSSPTIIVERAGSYAWTHKSWRVREE 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,891,977
Number of Sequences: 37544
Number of extensions: 424594
Number of successful extensions: 992
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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