Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30922
         (735 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32547| Best HMM Match : Epimerase (HMM E-Value=3.2e-08)            136   1e-32
SB_30795| Best HMM Match : Epimerase (HMM E-Value=0)                   35   0.079
SB_18728| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_52900| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.7)             29   3.0  
SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_10118| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.2  
SB_41989| Best HMM Match : RVT_1 (HMM E-Value=1.2e-33)                 28   9.0  

>SB_32547| Best HMM Match : Epimerase (HMM E-Value=3.2e-08)
          Length = 327

 Score =  136 bits (330), Expect = 1e-32
 Identities = 67/143 (46%), Positives = 89/143 (62%)
 Frame = +2

Query: 254 PYIFVDILDFKGLQKIVVDHRVDWLIHFSGLLSAIGEQNVPLAVRVNIEGMHNVIELAKQ 433
           PYI+ D+LD + LQ IVV+H +DW++HFS +LSA+GEQNV  A++VNIEG HN+IE  ++
Sbjct: 75  PYIYADVLDPQSLQSIVVNHNIDWIVHFSAILSAVGEQNVTQALQVNIEGFHNIIETCRK 134

Query: 434 YKLXIFVPSTIGAFGPDSPRNPTPN*QSQGREQYTGCPKFTRSC*ESTIIIKFGLDFRCL 613
           Y L +F PSTIGAFGP++P + TP+   Q  +   G  K            ++GLDFR  
Sbjct: 135 YNLRLFSPSTIGAFGPETPMDNTPDITIQRPKTIYGVAKVHMELLGEYYHHRYGLDFRSA 194

Query: 614 RFPGSNIPVIRQWRALPDYAIAI 682
           RFPG             DYAI I
Sbjct: 195 RFPGVISGDSMPGGGTTDYAIHI 217


>SB_30795| Best HMM Match : Epimerase (HMM E-Value=0)
          Length = 869

 Score = 34.7 bits (76), Expect = 0.079
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
 Frame = +2

Query: 254 PYIFVDILDFKGLQKIVVDHRVDWLIHFSGLLSAIGEQ-NVPLA-VRVNIEGMHNVIELA 427
           P+   D+L+ + L  I   H+ + ++HF+G L A+GE   +PL     N+ G  +++E  
Sbjct: 91  PFFIEDLLNKEALDDIFKKHKFNGVLHFAG-LKAVGESVQIPLRYYHNNLTGTLHLLECM 149

Query: 428 KQY 436
           K++
Sbjct: 150 KKH 152


>SB_18728| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -3

Query: 265 ENVRPSLTISSVGLIMSDSMTLFWPYFPRRYLAH 164
           EN+ P++ +SSVG++  +S  + WP    R+L H
Sbjct: 27  ENLSPAV-MSSVGMLALNSSDVSWPLLVERWLTH 59


>SB_52900| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.7)
          Length = 154

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
 Frame = -3

Query: 580 NSTLLTTPRELWTPRILFAALG--------LLIWRWISWRIRTERSNRTRNKYPKFVLFS 425
           N  ++ T  +LW PRI+F + G        L   +W   R   ERSN  R +   F + S
Sbjct: 37  NCRVVITRLKLWVPRIIFNSGGENMYMSKYLAPHKWTYLREMVERSNSGRAQTGSFKITS 96

Query: 424 *LDDIMHAF 398
            ++   H F
Sbjct: 97  GINSPRHVF 105


>SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1950

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = -3

Query: 553 ELWTPRILFAALG-----LLIWRWISWRIRTERSNRTRNKYPKFVLFS*LDDIMHAF 398
           +LW PRI+F   G     L  ++W   R   ERSN  R +   F + S ++   H F
Sbjct: 277 KLWVPRIIFNPGGDMSKYLAPYKWTYLREMVERSNSGRAQTGSFKITSGINRPRHVF 333


>SB_10118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 379

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
 Frame = -3

Query: 580 NSTLLTTPRELWTPRILFAALG--------LLIWRWISWRIRTERSNRTRNKYPKFVLFS 425
           N  ++ T  +LW PRI+F + G        L   +W   R   ERSN  R +   F + S
Sbjct: 75  NCRVVITRLKLWVPRIIFNSGGENMYMSKYLAPHKWTYLREMVERSNSGRAQTGSFKITS 134

Query: 424 *LDDIMHAF 398
            ++   H F
Sbjct: 135 GINSPRHVF 143


>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2499

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
 Frame = -3

Query: 580  NSTLLTTPRELWTPRILFAALG--------LLIWRWISWRIRTERSNRTRNKYPKFVLFS 425
            N  ++ T  +LW PRI+F + G        L   +W   R   ERSN  R +   F + S
Sbjct: 1590 NCRVVITKFKLWVPRIIFNSGGESMYMSKYLAPHKWTYLREMVERSNSRRAQTGSFRITS 1649

Query: 424  *LDDIMHAF 398
             ++   H F
Sbjct: 1650 GINRPRHVF 1658


>SB_41989| Best HMM Match : RVT_1 (HMM E-Value=1.2e-33)
          Length = 585

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 604 PLSKIPGE*YSSDPPVEGTTRLCNRNPSMDISPLEGNLRGVFLK 735
           P ++ PGE +S+    +GTT    R+ S+D+S   G L   F K
Sbjct: 528 PRTETPGESWSAAYVPDGTTGGDERDDSLDLSRSCGTLSKAFAK 571


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,313,981
Number of Sequences: 59808
Number of extensions: 498899
Number of successful extensions: 1178
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)