Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30922
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64847-1|AAN84827.1|  358|Caenorhabditis elegans Hypothetical pr...   120   8e-28
Z99709-12|CAI79146.1|  349|Caenorhabditis elegans Hypothetical p...    37   0.013
Z99709-11|CAB16861.1|  347|Caenorhabditis elegans Hypothetical p...    37   0.013
AF016451-6|AAB66000.2|  379|Caenorhabditis elegans Serpentine re...    30   2.0  
U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z93393-6|CAB07691.2|  495|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical...    28   7.9  

>U64847-1|AAN84827.1|  358|Caenorhabditis elegans Hypothetical
           protein F08F3.4 protein.
          Length = 358

 Score =  120 bits (290), Expect = 8e-28
 Identities = 61/142 (42%), Positives = 89/142 (62%)
 Frame = +2

Query: 257 YIFVDILDFKGLQKIVVDHRVDWLIHFSGLLSAIGEQNVPLAVRVNIEGMHNVIELAKQY 436
           Y ++DIL+   +++IVV+  +D ++HFS LLSA+GE NVPLA++VN  G+ N++++A ++
Sbjct: 84  YNYLDILNQGSIEEIVVNKNIDTIVHFSALLSAVGETNVPLALQVNCRGVENILQVAAKH 143

Query: 437 KLXIFVPSTIGAFGPDSPRNPTPN*QSQGREQYTGCPKFTRSC*ESTIIIKFGLDFRCLR 616
           KL +F+PSTIGAFGP +PR  TP+   Q      G  K            +FG+DFR +R
Sbjct: 144 KLKVFIPSTIGAFGPTTPRENTPDLTVQCPTTIYGVSKVYAERLGEYFNHRFGVDFRSMR 203

Query: 617 FPGSNIPVIRQWRALPDYAIAI 682
           FPG  I   +      DYAI I
Sbjct: 204 FPGI-ISATKPGGGTTDYAIQI 224


>Z99709-12|CAI79146.1|  349|Caenorhabditis elegans Hypothetical
           protein C47B2.6b protein.
          Length = 349

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
 Frame = +2

Query: 254 PYIFVDILDFKGLQKIVVDHRVDWLIHFSGLLSAIGEQNV-PLA-VRVNIEGMHNVIELA 427
           P+  VD+ D   L+K+  +++ D +IH +  L A+GE    PL     N+    N+I++ 
Sbjct: 61  PFQNVDVCDEAALEKVFSENKFDGIIHLAA-LKAVGESVAKPLQYYSNNLVASLNLIQMC 119

Query: 428 KQYKLXIFV-PSTIGAFGPDS 487
            +Y +  FV  S+   +GP S
Sbjct: 120 LKYNVKNFVFSSSATVYGPPS 140


>Z99709-11|CAB16861.1|  347|Caenorhabditis elegans Hypothetical
           protein C47B2.6a protein.
          Length = 347

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
 Frame = +2

Query: 254 PYIFVDILDFKGLQKIVVDHRVDWLIHFSGLLSAIGEQNV-PLA-VRVNIEGMHNVIELA 427
           P+  VD+ D   L+K+  +++ D +IH +  L A+GE    PL     N+    N+I++ 
Sbjct: 59  PFQNVDVCDEAALEKVFSENKFDGIIHLAA-LKAVGESVAKPLQYYSNNLVASLNLIQMC 117

Query: 428 KQYKLXIFV-PSTIGAFGPDS 487
            +Y +  FV  S+   +GP S
Sbjct: 118 LKYNVKNFVFSSSATVYGPPS 138


>AF016451-6|AAB66000.2|  379|Caenorhabditis elegans Serpentine
           receptor, class w protein140 protein.
          Length = 379

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -2

Query: 197 LAIFPTEIFSTLDTQLAKSPVIKIFGGLLLNNSPE*NLTLNLIEALHIFLNIITILY-CQ 21
           L  +   +F       A S  I +F  ++L   P  N ++N+I A   F +I T+LY  Q
Sbjct: 34  LGAYYNTVFENESRVAAVSFSINLFHFIILTRKPMINSSVNIIMAAIAFFDICTLLYEMQ 93

Query: 20  FATRSI 3
              +SI
Sbjct: 94  LIVQSI 99


>U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical
           protein C01G5.4 protein.
          Length = 1079

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 133 ITGDLAN-WVSSVLNISVGNMARTTSYCQTLL 225
           + GD  + W+S+VLNIS  + AR TS  Q LL
Sbjct: 422 VAGDARDQWLSNVLNISDEHFARITSGLQPLL 453


>Z93393-6|CAB07691.2|  495|Caenorhabditis elegans Hypothetical
           protein Y48E1B.5 protein.
          Length = 495

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 566 NNSA*TLDTPYIVRGLGIVNLALDFLANQDRTLQ 465
           N +   L+ P +VRG+ +VN  LD +A Q  TL+
Sbjct: 403 NGATTELEKPLLVRGVQLVNGRLDLVAMQLNTLK 436


>AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical
           protein Y110A7A.16 protein.
          Length = 1250

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 724 HLVNSLLTEKCPWKDCDCIIW 662
           HL N   T KC WK  + IIW
Sbjct: 317 HLSNYEFTRKCYWKFSESIIW 337


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,292,387
Number of Sequences: 27780
Number of extensions: 381913
Number of successful extensions: 859
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)