Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30922
(735 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g23920.1 68417.m03440 UDP-glucose 4-epimerase, putative / UDP... 35 0.064
At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative / UDP... 32 0.34
At3g11210.1 68416.m01362 GDSL-motif lipase/hydrolase family prot... 31 0.60
At5g45300.1 68418.m05561 glycosyl hydrolase family 14 protein si... 31 1.0
At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -relat... 30 1.4
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 29 3.2
At5g27990.1 68418.m03371 expressed protein predicted proteins, S... 29 3.2
At1g64440.1 68414.m07304 UDP-glucose 4-epimerase, putative / UDP... 29 4.2
At1g63180.1 68414.m07140 UDP-glucose 4-epimerase, putative / UDP... 29 4.2
At1g12780.1 68414.m01484 UDP-glucose 4-epimerase / UDP-galactose... 29 4.2
At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR... 27 9.8
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica... 27 9.8
>At4g23920.1 68417.m03440 UDP-glucose 4-epimerase, putative /
UDP-galactose 4-epimerase, putative / Galactowaldenase,
putative similar to UDP-galactose 4-epimerase from
Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
GI:3021357 [AJ005082]
Length = 350
Score = 34.7 bits (76), Expect = 0.064
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +2
Query: 266 VDILDFKGLQKIVVDHRVDWLIHFSGLLSAIGE--QNVPLAVRVNIEGMHNVIELAKQY 436
VD+ D L+KI + + D +IHF+G L A+GE + L NI G ++E+ QY
Sbjct: 62 VDLRDRPALEKIFSETKFDAVIHFAG-LKAVGESVEKPLLYYNNNIVGTVTLLEVMAQY 119
>At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative /
UDP-galactose 4-epimerase, putative / Galactowaldenase,
putative similar to UDP-galactose 4-epimerase from
Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
GI:3021357 [AJ005082]
Length = 351
Score = 32.3 bits (70), Expect = 0.34
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +2
Query: 266 VDILDFKGLQKIVVDHRVDWLIHFSGLLSAIGE--QNVPLAVRVNIEGMHNVIELAKQY 436
VD+ D L+KI + + D +IHF+G L A+GE + L N+ G ++E+ Q+
Sbjct: 63 VDLRDRSALEKIFSETKFDAVIHFAG-LKAVGESVEKPLLYYNNNLVGTITLLEVMAQH 120
>At3g11210.1 68416.m01362 GDSL-motif lipase/hydrolase family protein
contains Pfam profile PF00657: Lipase/Acylhydrolase with
GDSL-like motif
Length = 256
Score = 31.5 bits (68), Expect = 0.60
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = -2
Query: 281 SQVYRRKCKAVLNDFFGWFNNV*QYDVVLAIFPTEIFSTLDTQLAKSPVIKIFGG 117
S+VY RK +L ++GW N+ +VV +FP D + S VI FGG
Sbjct: 31 SEVYARKADIILRGYYGW-NSSRALEVVDQVFPK------DAAVQPSLVIVYFGG 78
>At5g45300.1 68418.m05561 glycosyl hydrolase family 14 protein
similar to beta-amylase GI:13560977 from [Castanea
crenata]
Length = 689
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -3
Query: 310 IYYDFLKSFEVKYIDENVRPSLTISSVGLIMSDSMTLFWPYFPRR 176
+Y+DF++SF ++ D V +T +GL S L +P FP R
Sbjct: 396 VYFDFMRSFRSEFDDLFVEGLITAVEIGL--GASGELKYPSFPER 438
>At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -related
similar to CLIP-associating protein CLASP2 (GI:13508651)
[Rattus norvegicus]
Length = 1439
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 571 LLTTPRELWTPRILFAALGLLIWRWISWRIRTE 473
LLTT E+ +P I+ G W SWR+R E
Sbjct: 105 LLTTLMEVSSPTIIVERAGSYAWMHKSWRVREE 137
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 96 GRIIKEKTSENFDYRRLGQLGVECAKY 176
GR ++KTS DYR G LGVE + Y
Sbjct: 415 GRWQQQKTSRGHDYRDDGPLGVEPSSY 441
>At5g27990.1 68418.m03371 expressed protein predicted proteins,
Saccharomyces cerevisiae and Schizosaccharomyces pombe
Length = 184
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -3
Query: 586 NDNSTLLTTPRELWTPRILFAALGLLIWRWISWRIRTERSNRTRNKYPK 440
N N+TL R+ IL +GL++WRW + R E R+ K
Sbjct: 2 NQNATLTVEARD-----ILKEGIGLILWRWTAMRAAVENGWGGRDSQAK 45
>At1g64440.1 68414.m07304 UDP-glucose 4-epimerase, putative /
UDP-galactose 4-epimerase, putative / Galactowaldenase,
putative similar to UDP-galactose 4-epimerase from
Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
GI:3021357 [AJ005082] (Plant Sci. 142, 147-154 (1999))
Length = 348
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 266 VDILDFKGLQKIVVDHRVDWLIHFSGLLSAIGE 364
VD+ D L+K+ + + D ++HF+G L A+GE
Sbjct: 62 VDLRDKPALEKVFSETKFDAVMHFAG-LKAVGE 93
>At1g63180.1 68414.m07140 UDP-glucose 4-epimerase, putative /
UDP-galactose 4-epimerase, putative / Galactowaldenase,
putative strong similarity to SP|Q42605 [GI:1143392]
from [Arabidopsis thaliana] (Arch. Biochem. Biophys. 327
(1), 27-34 (1996))
Length = 351
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +2
Query: 269 DILDFKGLQKIVVDHRVDWLIHFSGLLSAIGEQ--NVPLAVRVNIEGMHNVIELAKQYKL 442
D+ + ++K+ + R D +IHF+G L A+GE N N+ G N+ E +Y
Sbjct: 68 DLRNKGDIEKLFSNQRFDAVIHFAG-LKAVGESVGNPRRYFDNNLVGTINLYETMAKYNC 126
Query: 443 XIFVPST 463
+ V S+
Sbjct: 127 KMMVFSS 133
>At1g12780.1 68414.m01484 UDP-glucose 4-epimerase / UDP-galactose
4-epimerase / Galactowaldenase identical to SP|Q42605
[GB:CAA90941] from [Arabidopsis thaliana] (Arch.
Biochem. Biophys. 327 (1), 27-34 (1996))
Length = 351
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +2
Query: 269 DILDFKGLQKIVVDHRVDWLIHFSGLLSAIGE--QNVPLAVRVNIEGMHNVIELAKQYKL 442
D+ + ++K+ R D +IHF+G L A+GE +N N+ G N+ E +Y
Sbjct: 68 DLRNKGDIEKLFSKQRFDAVIHFAG-LKAVGESVENPRRYFDNNLVGTINLYETMAKYNC 126
Query: 443 XIFVPST 463
+ V S+
Sbjct: 127 KMMVFSS 133
>At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1231
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 326 LIHFSGLLSAIGEQNVPLAVRVNIEGMHNVIELAKQYK 439
L H S L S +G P +R+N+EG ++ EL + K
Sbjct: 665 LSHSSNLNSLMGLSEAPNLLRLNLEGCTSLKELPDEMK 702
>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
domain-containing protein similar to transcriptional
activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 2055
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 311 DLLRFSEVL*SQVYRRKCKAVLNDFFGWFNN 219
D+L+ S V YR A + D FGW +N
Sbjct: 1913 DVLKGSRVAAENRYRNAANACIEDSFGWASN 1943
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,360,770
Number of Sequences: 28952
Number of extensions: 356466
Number of successful extensions: 898
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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