Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30921
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0842 + 21754800-21754932,21755513-21756267                       30   1.6  
12_01_0774 + 7063465-7064011,7065183-7065791,7067905-7068464,706...    29   2.8  
08_01_0271 - 2189482-2190567                                           28   8.5  

>08_02_0842 + 21754800-21754932,21755513-21756267
          Length = 295

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 654 WRRGSENRA-CIWRRPMAGVGIGNAGVHLCHGLAYPIAGN 538
           WRRG    A C W+   A +G G  G   C G+A+   G+
Sbjct: 184 WRRGRAGAAWCGWQEDGATMGDGGDGPARCGGVAWETCGD 223


>12_01_0774 +
           7063465-7064011,7065183-7065791,7067905-7068464,
           7069411-7069530
          Length = 611

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -2

Query: 619 AATDGGRRHRKRGRTFMSRASVPDSWKR*EFCSRGLWSNPIIPHGPVGCNDSAGCFPIH 443
           A+ D      K+GRTF+  A   + W+R     R +  NP++ H  +   D  G  P+H
Sbjct: 472 ASPDSADIRDKQGRTFLHIACADEGWQRPTV--RYVVKNPML-HDLLNSQDKEGNTPLH 527


>08_01_0271 - 2189482-2190567
          Length = 361

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 671 RSVNNSGDVEARIEHASGGDRWRASA 594
           R V  SGDV   + HA+GGD   A A
Sbjct: 124 RQVMESGDVGVLLRHAAGGDEVAARA 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,012,935
Number of Sequences: 37544
Number of extensions: 365750
Number of successful extensions: 1108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)