Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30921
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27973| Best HMM Match : Fe-ADH (HMM E-Value=5.6e-06)                71   1e-12
SB_50213| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_2625| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  
SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)                   28   6.5  
SB_14710| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_13274| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_18943| Best HMM Match : DUF753 (HMM E-Value=5.9)                    28   8.6  

>SB_27973| Best HMM Match : Fe-ADH (HMM E-Value=5.6e-06)
          Length = 324

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 34/59 (57%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
 Frame = -3

Query: 567 HGLAYPIAGNVKSFVPEDYGPIR*SLT-ALSVVMTAPAVFRFTASSDPEKHLEAASLLG 394
           HG++YPI+G VKS+  +DY P    +   LSVV+TAPAVFRFTA S P++H+EAA L+G
Sbjct: 218 HGMSYPISGLVKSYKAKDYDPSHPIVPHGLSVVVTAPAVFRFTAPSCPDRHIEAARLMG 276


>SB_50213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +3

Query: 501 GLDHSPREQNS*RFQLSGTLARDINVRP-RFRCRRPPSVAARCMLDSRFHVSRIVH*TNE 677
           G +   R  ++ RF+L G LAR I ++  RF C  P  +  R   D   + S+    T  
Sbjct: 11  GYEAPQRWSSAPRFELRGYLARHIRIKAHRFECAAPAPLVLRVTTDHGPNTSKATRDTCS 70

Query: 678 IL 683
           +L
Sbjct: 71  LL 72


>SB_2625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 537 RFQLSGTLARDINVRP-RFRCRRPPSVAARCMLDSRFHVSRIVH 665
           RF+L G LAR I ++  RF C  P  +  R   D   + S+  +
Sbjct: 55  RFELRGYLARHIRIKAHRFECAAPAPLVLRVTTDHGPNTSKATY 98


>SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)
          Length = 627

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = +2

Query: 533 LTFPAIGYASP*HKCTPAFPMPTPAIGRRQMHARFSLPRLQNCSLNERNTFCKV 694
           L  P+I    P H   P  P+P P        A+ SLP L+   L  +N FC V
Sbjct: 147 LAHPSITQPPPRHS-PPQTPVPPPP--PLPPFAQVSLPPLEQAFLEVKNLFCDV 197


>SB_14710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 347

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +1

Query: 196 PLQIVS--LERFLINDPEVKHPDQVRYVVISIS*CLQSVFNLQLIHIQ 333
           PL+I++  L+R ++ D     P   +Y  I  + CL+SVF   + H+Q
Sbjct: 7   PLKILATGLKRKILFDTNATRPGLRKYRKIKAADCLKSVFENTVSHMQ 54


>SB_13274| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 43

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 571 MSRASVPDSWKR*EFCSRGLWSNPIIP 491
           + R  VPD W R  FC   L  +P+IP
Sbjct: 15  IGRTDVPDKWGRKIFCDTVLSWSPMIP 41


>SB_18943| Best HMM Match : DUF753 (HMM E-Value=5.9)
          Length = 676

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 569 HKCTPAFPMPTPAIGRRQMHARFSLPRLQNCSLN 670
           H   P  P   P +   Q H  ++L R QN SLN
Sbjct: 235 HTVMPCAPEKIPELAPNQAHDSYALFRSQNLSLN 268


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,839,997
Number of Sequences: 59808
Number of extensions: 423619
Number of successful extensions: 992
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)