Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30921
         (713 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45060.1 68416.m04857 high-affinity nitrate transporter, puta...    31   0.76 
At3g51090.1 68416.m05594 expressed protein                             29   4.0  
At5g43190.1 68418.m05276 F-box family protein (FBX6) contains si...    28   7.1  
At4g33500.1 68417.m04758 protein phosphatase 2C-related / PP2C-r...    28   7.1  
At4g20770.1 68417.m03016 pentatricopeptide (PPR) repeat-containi...    28   7.1  
At1g03230.1 68414.m00301 extracellular dermal glycoprotein, puta...    27   9.3  

>At3g45060.1 68416.m04857 high-affinity nitrate transporter,
           putative similar to trans-membrane nitrate transporter
           protein AtNRT2:1 [Arabidopsis thaliana] GI:3747058,
           high-affinity nitrate transporter ACH1 [Arabidopsis
           thaliana] GI:3608362
          Length = 542

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = -3

Query: 594 IGNAGVHLCHGLAYP--IAGNVKSFVPEDYGPIR*SLTALSVVMTAPAVFRFTASSDPEK 421
           IGNAGV    G  +     G V   +   YG      TA S+++TAPAVF  +  +D   
Sbjct: 110 IGNAGVASVSGAIFSRLAMGAVCDLLGARYG------TAFSLMLTAPAVFSMSFVADAGS 163

Query: 420 HLEAASLLG 394
           +L    ++G
Sbjct: 164 YLAVRFMIG 172


>At3g51090.1 68416.m05594 expressed protein
          Length = 298

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +2

Query: 500 RIGP*SSGTKLLTFPAIGYASP*HKCTPAFPMPTPAI----GRRQMHARF 637
           R+G  SSG  L T  + GY++P    T  F   + ++      RQ HARF
Sbjct: 59  RLGGTSSGVNLSTLRSFGYSNPAFDKTQEFRSSSSSLVSYSSFRQFHARF 108


>At5g43190.1 68418.m05276 F-box family protein (FBX6) contains
           similarity to unusual floral organs (UFO) GI:4376159
           from [Arabidopsis thaliana]
          Length = 403

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +2

Query: 278 LVYPNAFNPFSIFNLSIYKSMTSESILPASFLLALVTSAPSRLAASRCFSGSLDAVN 448
           L +P +FN F +FN ++    T    LP S  L   +S  S      CFS S  +V+
Sbjct: 101 LSHPQSFNSFPLFNPNLISWCTLP--LPRSLSLTCASSLLSSSNGLLCFSLSPSSVS 155


>At4g33500.1 68417.m04758 protein phosphatase 2C-related /
           PP2C-related YHR077c (NMD2,IFS1) protein -Saccharomyces
           cerevisiae,PID:g555939
          Length = 724

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -3

Query: 522 PEDYGPIR*SLTALSVVMTAPAVFRFTASSDPEKHLEA---ASLLGADVTNAK 373
           PE+  P +  L + + +     VFRF  +S+ EK+LEA   A  +  +  NAK
Sbjct: 63  PENSAPEKFDLVSSTQLKDGSHVFRFGDASEIEKYLEAEEKARCVEVETQNAK 115


>At4g20770.1 68417.m03016 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 740

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 320 LSIYKSMTSESILPASFLLALVTSAPSRL 406
           L +YK M  +  LP+ F LA V SA S++
Sbjct: 89  LVVYKRMVCDGFLPSRFTLASVLSACSKV 117


>At1g03230.1 68414.m00301 extracellular dermal glycoprotein,
           putative / EDGP, putative similar to extracellular
           dermal glycoprotein EDGP precursor [Daucus carota]
           GI:285741
          Length = 434

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 290 NAFNPFSIFNLSIYKSMTSESILPAS 367
           ++ NP+++   SIYK+ TSE I  A+
Sbjct: 290 SSVNPYTVLESSIYKAFTSEFIRQAA 315


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,473,568
Number of Sequences: 28952
Number of extensions: 288289
Number of successful extensions: 765
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)