Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30919
         (736 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   1.9  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   3.4  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   7.8  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   7.8  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   7.8  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   7.8  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 348 RLTEGVDRLLVHWTRR 395
           R ++G D+ +VHW RR
Sbjct: 10  RASKGQDKHMVHWFRR 25


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = +3

Query: 63  HYLHAQHHL 89
           H++HAQHH+
Sbjct: 328 HHIHAQHHV 336


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 718 PLNDKVKQLTNIRLLRTLVPSLVSQCYGNSEAIN 617
           P   +V+ L ++  L TLV  L ++    S AIN
Sbjct: 491 PHTGRVEVLDSVEKLETLVHQLNTEVLHLSNAIN 524


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 609 PVTSKRYNNYQAIHHITNS*PE 544
           P+T++  NN+   HH+    P+
Sbjct: 156 PLTTQSMNNHHMGHHMQEQHPQ 177


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 127 NFKLLFVMLA*GFTAHI*IYQGLILYS 207
           N  LLF++ +  FT H+  Y   I+++
Sbjct: 67  NVHLLFLLCSGYFTVHLLFYCPFIIFT 93


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 609 PVTSKRYNNYQAIHHITNS*PE 544
           P+T++  NN+   HH+    P+
Sbjct: 158 PLTTQSMNNHHMGHHMQEQHPQ 179


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,712
Number of Sequences: 336
Number of extensions: 3739
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)