Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30919
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    27   2.8  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   8.5  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   8.5  

>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 363 VDRLLVHWTRRRAFLPVHLKRQPSVECYL 449
           +DR  +   R+R ++PVH KR P  E  L
Sbjct: 123 IDRGEIDSKRQRHYVPVHCKRMPKKEITL 151


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 83   SLGRILNHVNKFQKSILNFYL*CWREALQPIFKSIKV*FFTVLSGKEHSM 232
            SL  + N   + Q + L+F+L  W   L    K+      TV+SG+ +S+
Sbjct: 1006 SLLSVENICKQLQTTPLSFFLTAWSTVLSSYLKTNDFLVGTVVSGRVNSL 1055



 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 83   SLGRILNHVNKFQKSILNFYL*CWREALQPIFKSIKV*FFTVLSGKE 223
            SL +I +  N F  +   F   CW + L  +  S  + F  ++SG++
Sbjct: 1532 SLSQIDDLCNGFSFTTSTFLQCCWAKTLSFLLNSRDICFGNIISGRD 1578


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 10   ALLGDNRHNLHTSYIINYIICMHNITWTYLKSREQISEINFKLL 141
            ALL    H      ++ YI+   N+  T+L+S E  S++  K+L
Sbjct: 1129 ALLNTASHTAVKLPVLLYILDTLNLVITHLQSEESESQLREKIL 1172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,972,683
Number of Sequences: 5004
Number of extensions: 60439
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)