Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30919
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0785 - 31730300-31730701,31730785-31730856,31730940-317328...    30   1.7  
12_01_0182 + 1345209-1347065                                           29   5.1  

>02_05_0785 -
           31730300-31730701,31730785-31730856,31730940-31732864,
           31733000-31733150,31733944-31734009,31734247-31734645
          Length = 1004

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 176 IWAVKPHANITNRSL--KLISEICSRDLRYVQVMLC 75
           IW + PH NI NR +   +IS  C      VQ ++C
Sbjct: 496 IWDIDPHGNIINRWIGRTVISSCCKLSYDLVQDLIC 531


>12_01_0182 + 1345209-1347065
          Length = 618

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +2

Query: 374 SRALDPTSCLPSSTLEASTISRMLPSAYS 460
           S  L PT+ L +S L AS+ SR LPSA S
Sbjct: 90  SSPLPPTTFLANSLLLASSSSRCLPSALS 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,620,077
Number of Sequences: 37544
Number of extensions: 370959
Number of successful extensions: 697
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)