Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30919
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44314| Best HMM Match : RnaseH (HMM E-Value=0.49)                   32   0.42 

>SB_44314| Best HMM Match : RnaseH (HMM E-Value=0.49)
          Length = 317

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
 Frame = +1

Query: 226 FYVVPPYTLMY-C--KIAIVNPEGRLLLETEKSSVWTVSLKHLI-D*PREL 366
           FY  PP++L+  C  KIA+ N EG L++    +  W   L H++ D PR L
Sbjct: 202 FYAFPPFSLIARCLQKIAMENSEGLLIVPMWPTQPWYSQLLHMLTDVPRML 252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,290,146
Number of Sequences: 59808
Number of extensions: 462475
Number of successful extensions: 882
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)