Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30918
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...    98   9e-22
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    55   1e-08
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    26   6.1  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    25   8.1  

>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 98.3 bits (234), Expect = 9e-22
 Identities = 47/80 (58%), Positives = 57/80 (71%)
 Frame = +2

Query: 257 SSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG 436
           +S +DVAKQLK QQ+VM GHR+ SM  EL R IPTAA   G  +GAL+V +D LGA+GSG
Sbjct: 385 ASPRDVAKQLKSQQLVMAGHREGSMYKELKRIIPTAAWLSGAVVGALAVASDLLGALGSG 444

Query: 437 TGILLAVTIIYQYFEIFVKE 496
           T +LL  T IY Y+E   KE
Sbjct: 445 TAVLLCTTTIYGYYEQLQKE 464



 Score = 76.2 bits (179), Expect = 4e-15
 Identities = 39/89 (43%), Positives = 49/89 (55%)
 Frame = +3

Query: 3   NLYVISQMLAVKFSGNFLVNVLGVWADXXXXXXXXXXXXXXLCYYLSPPESLAHIAHDPV 182
           NL+  S++L  +FS NFLV  LGVW                L YYLSPP S      DP+
Sbjct: 309 NLFFASRLLFNRFSSNFLVRFLGVWEQTATSG---------LSYYLSPPASFQDALIDPI 359

Query: 183 HALLYVLFMLGSCAFFSKTWIDVSAPRPK 269
           H L+YV F + +CA FSK WI+VS   P+
Sbjct: 360 HTLVYVFFTMFACALFSKLWIEVSGASPR 388


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 28/75 (37%), Positives = 43/75 (57%)
 Frame = +2

Query: 266 KDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGI 445
           +DV    KE Q+V+ G+R+ +M+ EL + IP AA      +  LSV+A    A   G G+
Sbjct: 392 RDVLLFFKENQLVIAGYREATMLKELEKIIPIAAKLSAFFVSILSVIAGIF-ASTFGVGV 450

Query: 446 LLAVTIIYQYFEIFV 490
           L+A  ++Y  FE+ V
Sbjct: 451 LIASALVYASFEMIV 465



 Score = 37.9 bits (84), Expect = 0.001
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +3

Query: 126 LCYYLSPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSAPRPK 269
           L Y+L PP  L+     PVH ++Y + ++    +FS  W++ +A  P+
Sbjct: 345 LVYFLYPPLGLSEALLHPVHTVIYTITLICITIYFSLLWMNATAGGPR 392


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 562 DRCVQLRFYCRFCSESTSLGV 624
           DRC++L  YC  C   ++ G+
Sbjct: 326 DRCIELYKYCEKCGIKSAFGI 346


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 429 PMAPRKSASTDRAPMHSPPNAAAVGM*RFSSWI 331
           PMA RK A T R    +     + G+ R SSW+
Sbjct: 102 PMATRKIAGTYRDAPDNSMQQTSTGVHRSSSWL 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,453,564
Number of Sequences: 5004
Number of extensions: 42297
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)