Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30918
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.)             158   5e-39
SB_5622| Best HMM Match : DUF6 (HMM E-Value=2.6e-12)                   34   0.099
SB_44680| Best HMM Match : Gemini_V1 (HMM E-Value=4)                   33   0.23 
SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)               30   1.6  
SB_58061| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             28   8.6  

>SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1084

 Score =  158 bits (383), Expect = 5e-39
 Identities = 75/79 (94%), Positives = 78/79 (98%)
 Frame = +2

Query: 272  VAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILL 451
            VAKQLK+QQMVMRGHRD SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILL
Sbjct: 998  VAKQLKDQQMVMRGHRDKSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILL 1057

Query: 452  AVTIIYQYFEIFVKEQAEM 508
            AVTIIYQYFEIFVKEQ+EM
Sbjct: 1058 AVTIIYQYFEIFVKEQSEM 1076


>SB_5622| Best HMM Match : DUF6 (HMM E-Value=2.6e-12)
          Length = 224

 Score = 34.3 bits (75), Expect = 0.099
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 132 YYLSPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDV 251
           YY++ PE   HI  + V+ ++Y +F+  +  +   TW ++
Sbjct: 116 YYVNKPEKFHHIPREEVYPIVYAIFIASALCYLLITWCNM 155


>SB_44680| Best HMM Match : Gemini_V1 (HMM E-Value=4)
          Length = 248

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 262 GQRCGETTEGTADGDARSPRQLHDPRTEPLHPD 360
           G R G  +  T    AR P++ HD RT  +HPD
Sbjct: 183 GGRVGGVSRSTHRDAARGPKERHDGRTRAVHPD 215


>SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)
          Length = 851

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 441 PVPEPMAPRKSASTDR-APMHSPPNAAAV 358
           P+ EP AP  +  T   AP+ SPP+AAAV
Sbjct: 262 PLAEPPAPPPTTPTSAGAPLSSPPSAAAV 290


>SB_58061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 328 HDPRTEPLHPDGGRVRRTVHRGSVSAGRLPRGHRL 432
           HDP+  P  P G +  RTVHR +++      G  L
Sbjct: 7   HDPQRTPRTPLGLKAERTVHRVTLNPSTASPGETL 41


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -1

Query: 449 AVSQCRSR-WPRGS--RPALTEPRCTVLRTRPPSGCSGSVRGSWSCRGD 312
           ++++C+ + W   S  RP    PRCT L +  P  CS S    W   G+
Sbjct: 479 SLTRCQQKYWEAVSNPRPEQHVPRCTNLGSYEPLQCSASSHECWCVGGN 527


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,534,086
Number of Sequences: 59808
Number of extensions: 366348
Number of successful extensions: 1311
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)