Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30918
(710 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK022027-1|BAB13955.1| 234|Homo sapiens protein ( Homo sapiens ... 168 2e-41
AK001440-1|BAA91692.1| 234|Homo sapiens protein ( Homo sapiens ... 168 2e-41
AF346603-1|AAK29084.1| 476|Homo sapiens Sec61 alpha form 2 prot... 168 2e-41
AL831940-1|CAD38592.1| 215|Homo sapiens hypothetical protein pr... 165 1e-40
AK075148-1|BAC11434.1| 170|Homo sapiens protein ( Homo sapiens ... 165 1e-40
AK074928-1|BAC11298.1| 356|Homo sapiens protein ( Homo sapiens ... 165 1e-40
AK074907-1|BAC11283.1| 170|Homo sapiens protein ( Homo sapiens ... 165 1e-40
AF346602-1|AAK29083.1| 476|Homo sapiens Sec61 alpha form 1 prot... 165 1e-40
AF084458-1|AAD39847.1| 476|Homo sapiens sec61 homolog protein. 165 1e-40
BC026179-1|AAH26179.1| 418|Homo sapiens SEC61A2 protein protein. 124 4e-28
AK022640-1|BAB14148.1| 437|Homo sapiens protein ( Homo sapiens ... 124 4e-28
AK125672-1|BAC86239.1| 203|Homo sapiens protein ( Homo sapiens ... 31 4.1
BC011138-1|AAH11138.1| 206|Homo sapiens PIP5K1C protein protein. 30 9.4
AK092432-1|BAC03889.1| 131|Homo sapiens protein ( Homo sapiens ... 30 9.4
>AK022027-1|BAB13955.1| 234|Homo sapiens protein ( Homo sapiens
cDNA FLJ11965 fis, clone HEMBB1001112, moderately
similar to Homo sapiens sec61 homolog mRNA. ).
Length = 234
Score = 168 bits (408), Expect = 2e-41
Identities = 81/84 (96%), Positives = 83/84 (98%)
Frame = +2
Query: 257 SSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG 436
SSAKDVAKQLKEQQMVMRGHRD SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG
Sbjct: 143 SSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG 202
Query: 437 TGILLAVTIIYQYFEIFVKEQAEM 508
TGILLAVTIIYQYFEIFVKEQAE+
Sbjct: 203 TGILLAVTIIYQYFEIFVKEQAEV 226
Score = 124 bits (298), Expect = 4e-28
Identities = 56/89 (62%), Positives = 65/89 (73%)
Frame = +3
Query: 3 NLYVISQMLAVKFSGNFLVNVLGVWADXXXXXXXXXXXXXXLCYYLSPPESLAHIAHDPV 182
NLYVISQML+V+FSGNFLVN+LG WAD LCYYLSPPES+ I DPV
Sbjct: 58 NLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPV 117
Query: 183 HALLYVLFMLGSCAFFSKTWIDVSAPRPK 269
H ++Y++FMLGSCAFFSKTWI+VS K
Sbjct: 118 HVVVYIIFMLGSCAFFSKTWIEVSGSSAK 146
>AK001440-1|BAA91692.1| 234|Homo sapiens protein ( Homo sapiens
cDNA FLJ10578 fis, clone NT2RP2003433, highly similar to
PROTEIN TRANSPORT PROTEIN SEC61 ALPHA SUBUNIT. ).
Length = 234
Score = 168 bits (408), Expect = 2e-41
Identities = 81/84 (96%), Positives = 83/84 (98%)
Frame = +2
Query: 257 SSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG 436
SSAKDVAKQLKEQQMVMRGHRD SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG
Sbjct: 143 SSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG 202
Query: 437 TGILLAVTIIYQYFEIFVKEQAEM 508
TGILLAVTIIYQYFEIFVKEQAE+
Sbjct: 203 TGILLAVTIIYQYFEIFVKEQAEV 226
Score = 124 bits (298), Expect = 4e-28
Identities = 56/89 (62%), Positives = 65/89 (73%)
Frame = +3
Query: 3 NLYVISQMLAVKFSGNFLVNVLGVWADXXXXXXXXXXXXXXLCYYLSPPESLAHIAHDPV 182
NLYVISQML+V+FSGNFLVN+LG WAD LCYYLSPPES+ I DPV
Sbjct: 58 NLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPV 117
Query: 183 HALLYVLFMLGSCAFFSKTWIDVSAPRPK 269
H ++Y++FMLGSCAFFSKTWI+VS K
Sbjct: 118 HVVVYIIFMLGSCAFFSKTWIEVSGSSAK 146
>AF346603-1|AAK29084.1| 476|Homo sapiens Sec61 alpha form 2
protein.
Length = 476
Score = 168 bits (408), Expect = 2e-41
Identities = 81/84 (96%), Positives = 83/84 (98%)
Frame = +2
Query: 257 SSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG 436
SSAKDVAKQLKEQQMVMRGHRD SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG
Sbjct: 385 SSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG 444
Query: 437 TGILLAVTIIYQYFEIFVKEQAEM 508
TGILLAVTIIYQYFEIFVKEQAE+
Sbjct: 445 TGILLAVTIIYQYFEIFVKEQAEV 468
Score = 124 bits (298), Expect = 4e-28
Identities = 56/89 (62%), Positives = 65/89 (73%)
Frame = +3
Query: 3 NLYVISQMLAVKFSGNFLVNVLGVWADXXXXXXXXXXXXXXLCYYLSPPESLAHIAHDPV 182
NLYVISQML+V+FSGNFLVN+LG WAD LCYYLSPPES+ I DPV
Sbjct: 300 NLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPV 359
Query: 183 HALLYVLFMLGSCAFFSKTWIDVSAPRPK 269
H ++Y++FMLGSCAFFSKTWI+VS K
Sbjct: 360 HVVVYIIFMLGSCAFFSKTWIEVSGSSAK 388
>AL831940-1|CAD38592.1| 215|Homo sapiens hypothetical protein
protein.
Length = 215
Score = 165 bits (401), Expect = 1e-40
Identities = 79/84 (94%), Positives = 83/84 (98%)
Frame = +2
Query: 257 SSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG 436
SSAKDVAKQLKEQQMVMRGHR+ SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG
Sbjct: 124 SSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG 183
Query: 437 TGILLAVTIIYQYFEIFVKEQAEM 508
TGILLAVTIIYQYFEIFVKEQ+E+
Sbjct: 184 TGILLAVTIIYQYFEIFVKEQSEV 207
Score = 118 bits (284), Expect = 2e-26
Identities = 52/89 (58%), Positives = 63/89 (70%)
Frame = +3
Query: 3 NLYVISQMLAVKFSGNFLVNVLGVWADXXXXXXXXXXXXXXLCYYLSPPESLAHIAHDPV 182
NLYVISQML+ +FSGN LV++LG W+D LCYYLSPPES + DPV
Sbjct: 39 NLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPV 98
Query: 183 HALLYVLFMLGSCAFFSKTWIDVSAPRPK 269
HA++Y++FMLGSCAFFSKTWI+VS K
Sbjct: 99 HAVVYIVFMLGSCAFFSKTWIEVSGSSAK 127
>AK075148-1|BAC11434.1| 170|Homo sapiens protein ( Homo sapiens
cDNA FLJ90667 fis, clone PLACE1005410, highly similar to
Protein transport protein Sec61 alpha subunitisoform 1.
).
Length = 170
Score = 165 bits (401), Expect = 1e-40
Identities = 79/84 (94%), Positives = 83/84 (98%)
Frame = +2
Query: 257 SSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG 436
SSAKDVAKQLKEQQMVMRGHR+ SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG
Sbjct: 79 SSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG 138
Query: 437 TGILLAVTIIYQYFEIFVKEQAEM 508
TGILLAVTIIYQYFEIFVKEQ+E+
Sbjct: 139 TGILLAVTIIYQYFEIFVKEQSEV 162
Score = 104 bits (250), Expect = 3e-22
Identities = 45/82 (54%), Positives = 56/82 (68%)
Frame = +3
Query: 24 MLAVKFSGNFLVNVLGVWADXXXXXXXXXXXXXXLCYYLSPPESLAHIAHDPVHALLYVL 203
ML+ +FSGN LV++LG W+D LCYYLSPPES + DPVHA++Y++
Sbjct: 1 MLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIV 60
Query: 204 FMLGSCAFFSKTWIDVSAPRPK 269
FMLGSCAFFSKTWI+VS K
Sbjct: 61 FMLGSCAFFSKTWIEVSGSSAK 82
>AK074928-1|BAC11298.1| 356|Homo sapiens protein ( Homo sapiens
cDNA FLJ90447 fis, clone NT2RP3001240, highly similar to
Canis familiaris sec61 homologue mRNA. ).
Length = 356
Score = 165 bits (401), Expect = 1e-40
Identities = 79/84 (94%), Positives = 83/84 (98%)
Frame = +2
Query: 257 SSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG 436
SSAKDVAKQLKEQQMVMRGHR+ SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG
Sbjct: 265 SSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG 324
Query: 437 TGILLAVTIIYQYFEIFVKEQAEM 508
TGILLAVTIIYQYFEIFVKEQ+E+
Sbjct: 325 TGILLAVTIIYQYFEIFVKEQSEV 348
Score = 118 bits (284), Expect = 2e-26
Identities = 52/89 (58%), Positives = 63/89 (70%)
Frame = +3
Query: 3 NLYVISQMLAVKFSGNFLVNVLGVWADXXXXXXXXXXXXXXLCYYLSPPESLAHIAHDPV 182
NLYVISQML+ +FSGN LV++LG W+D LCYYLSPPES + DPV
Sbjct: 180 NLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPV 239
Query: 183 HALLYVLFMLGSCAFFSKTWIDVSAPRPK 269
HA++Y++FMLGSCAFFSKTWI+VS K
Sbjct: 240 HAVVYIVFMLGSCAFFSKTWIEVSGSSAK 268
>AK074907-1|BAC11283.1| 170|Homo sapiens protein ( Homo sapiens
cDNA FLJ90426 fis, clone NT2RP3000460, highly similar to
Protein transport protein Sec61 alpha subunitisoform 1.
).
Length = 170
Score = 165 bits (401), Expect = 1e-40
Identities = 79/84 (94%), Positives = 83/84 (98%)
Frame = +2
Query: 257 SSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG 436
SSAKDVAKQLKEQQMVMRGHR+ SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG
Sbjct: 79 SSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG 138
Query: 437 TGILLAVTIIYQYFEIFVKEQAEM 508
TGILLAVTIIYQYFEIFVKEQ+E+
Sbjct: 139 TGILLAVTIIYQYFEIFVKEQSEV 162
Score = 104 bits (250), Expect = 3e-22
Identities = 45/82 (54%), Positives = 56/82 (68%)
Frame = +3
Query: 24 MLAVKFSGNFLVNVLGVWADXXXXXXXXXXXXXXLCYYLSPPESLAHIAHDPVHALLYVL 203
ML+ +FSGN LV++LG W+D LCYYLSPPES + DPVHA++Y++
Sbjct: 1 MLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIV 60
Query: 204 FMLGSCAFFSKTWIDVSAPRPK 269
FMLGSCAFFSKTWI+VS K
Sbjct: 61 FMLGSCAFFSKTWIEVSGSSAK 82
>AF346602-1|AAK29083.1| 476|Homo sapiens Sec61 alpha form 1
protein.
Length = 476
Score = 165 bits (401), Expect = 1e-40
Identities = 79/84 (94%), Positives = 83/84 (98%)
Frame = +2
Query: 257 SSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG 436
SSAKDVAKQLKEQQMVMRGHR+ SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG
Sbjct: 385 SSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG 444
Query: 437 TGILLAVTIIYQYFEIFVKEQAEM 508
TGILLAVTIIYQYFEIFVKEQ+E+
Sbjct: 445 TGILLAVTIIYQYFEIFVKEQSEV 468
Score = 118 bits (284), Expect = 2e-26
Identities = 52/89 (58%), Positives = 63/89 (70%)
Frame = +3
Query: 3 NLYVISQMLAVKFSGNFLVNVLGVWADXXXXXXXXXXXXXXLCYYLSPPESLAHIAHDPV 182
NLYVISQML+ +FSGN LV++LG W+D LCYYLSPPES + DPV
Sbjct: 300 NLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPV 359
Query: 183 HALLYVLFMLGSCAFFSKTWIDVSAPRPK 269
HA++Y++FMLGSCAFFSKTWI+VS K
Sbjct: 360 HAVVYIVFMLGSCAFFSKTWIEVSGSSAK 388
>AF084458-1|AAD39847.1| 476|Homo sapiens sec61 homolog protein.
Length = 476
Score = 165 bits (401), Expect = 1e-40
Identities = 79/84 (94%), Positives = 83/84 (98%)
Frame = +2
Query: 257 SSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG 436
SSAKDVAKQLKEQQMVMRGHR+ SM+HELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG
Sbjct: 385 SSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG 444
Query: 437 TGILLAVTIIYQYFEIFVKEQAEM 508
TGILLAVTIIYQYFEIFVKEQ+E+
Sbjct: 445 TGILLAVTIIYQYFEIFVKEQSEV 468
Score = 118 bits (284), Expect = 2e-26
Identities = 52/89 (58%), Positives = 63/89 (70%)
Frame = +3
Query: 3 NLYVISQMLAVKFSGNFLVNVLGVWADXXXXXXXXXXXXXXLCYYLSPPESLAHIAHDPV 182
NLYVISQML+ +FSGN LV++LG W+D LCYYLSPPES + DPV
Sbjct: 300 NLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPV 359
Query: 183 HALLYVLFMLGSCAFFSKTWIDVSAPRPK 269
HA++Y++FMLGSCAFFSKTWI+VS K
Sbjct: 360 HAVVYIVFMLGSCAFFSKTWIEVSGSSAK 388
>BC026179-1|AAH26179.1| 418|Homo sapiens SEC61A2 protein protein.
Length = 418
Score = 124 bits (298), Expect = 4e-28
Identities = 56/89 (62%), Positives = 65/89 (73%)
Frame = +3
Query: 3 NLYVISQMLAVKFSGNFLVNVLGVWADXXXXXXXXXXXXXXLCYYLSPPESLAHIAHDPV 182
NLYVISQML+V+FSGNFLVN+LG WAD LCYYLSPPES+ I DPV
Sbjct: 300 NLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPV 359
Query: 183 HALLYVLFMLGSCAFFSKTWIDVSAPRPK 269
H ++Y++FMLGSCAFFSKTWI+VS K
Sbjct: 360 HVVVYIIFMLGSCAFFSKTWIEVSGSSAK 388
Score = 62.1 bits (144), Expect = 2e-09
Identities = 28/30 (93%), Positives = 29/30 (96%)
Frame = +2
Query: 257 SSAKDVAKQLKEQQMVMRGHRDNSMIHELN 346
SSAKDVAKQLKEQQMVMRGHRD SM+HELN
Sbjct: 385 SSAKDVAKQLKEQQMVMRGHRDTSMVHELN 414
>AK022640-1|BAB14148.1| 437|Homo sapiens protein ( Homo sapiens
cDNA FLJ12578 fis, clone NT2RM4001054, moderately
similar to Homo sapiens sec61 homolog mRNA. ).
Length = 437
Score = 124 bits (298), Expect = 4e-28
Identities = 56/89 (62%), Positives = 65/89 (73%)
Frame = +3
Query: 3 NLYVISQMLAVKFSGNFLVNVLGVWADXXXXXXXXXXXXXXLCYYLSPPESLAHIAHDPV 182
NLYVISQML+V+FSGNFLVN+LG WAD LCYYLSPPES+ I DPV
Sbjct: 300 NLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPV 359
Query: 183 HALLYVLFMLGSCAFFSKTWIDVSAPRPK 269
H ++Y++FMLGSCAFFSKTWI+VS K
Sbjct: 360 HVVVYIIFMLGSCAFFSKTWIEVSGSSAK 388
Score = 64.1 bits (149), Expect = 5e-10
Identities = 29/31 (93%), Positives = 30/31 (96%)
Frame = +2
Query: 257 SSAKDVAKQLKEQQMVMRGHRDNSMIHELNR 349
SSAKDVAKQLKEQQMVMRGHRD SM+HELNR
Sbjct: 385 SSAKDVAKQLKEQQMVMRGHRDTSMVHELNR 415
>AK125672-1|BAC86239.1| 203|Homo sapiens protein ( Homo sapiens
cDNA FLJ43684 fis, clone TBAES2001492. ).
Length = 203
Score = 31.1 bits (67), Expect = 4.1
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = -1
Query: 434 RSRWPRGSRPALTEPRCTVLRT---RPPSGCSGS 342
RS WP GSRP + P T T P S CSGS
Sbjct: 26 RSWWPLGSRPLASVPSTTWAPTPSASPSSSCSGS 59
>BC011138-1|AAH11138.1| 206|Homo sapiens PIP5K1C protein protein.
Length = 206
Score = 29.9 bits (64), Expect = 9.4
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +1
Query: 298 DGDARSPRQLHDPRTEPLHPDGGRVRRTVHRGSVSAGRLPRG 423
D RSP + H PR +PLH R R + G + P G
Sbjct: 31 DPSPRSPARTHTPREQPLHSAQERGRPSSGTGQPRGSQHPSG 72
>AK092432-1|BAC03889.1| 131|Homo sapiens protein ( Homo sapiens
cDNA FLJ35113 fis, clone PLACE6007242. ).
Length = 131
Score = 29.9 bits (64), Expect = 9.4
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = -1
Query: 461 W*RRAVSQCRSRWPRGSRPALTEPRCTVLRTRPPSGCSGSVRGSWSC 321
W R + Q + P G RP C T PP+GCS GS C
Sbjct: 61 WPERLIVQWQRPRPGGCRPPTHG--CARSSTAPPAGCSSPPAGSPRC 105
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,695,188
Number of Sequences: 237096
Number of extensions: 1870789
Number of successful extensions: 6240
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6239
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8287202872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -