Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30918
(710 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY069569-1|AAL39714.1| 476|Drosophila melanogaster LD29847p pro... 167 2e-41
AE014134-1100|AAF52389.2| 476|Drosophila melanogaster CG9539-PA... 167 2e-41
AB062670-1|BAB78518.1| 476|Drosophila melanogaster DSec61alpha ... 167 2e-41
Y08821-1|CAA70056.1| 479|Drosophila melanogaster ladybird early... 29 8.2
BT024396-1|ABC86458.1| 114|Drosophila melanogaster IP05150p pro... 29 8.2
AE014297-3010|AAF55896.1| 479|Drosophila melanogaster CG6545-PA... 29 8.2
>AY069569-1|AAL39714.1| 476|Drosophila melanogaster LD29847p
protein.
Length = 476
Score = 167 bits (405), Expect = 2e-41
Identities = 80/84 (95%), Positives = 83/84 (98%)
Frame = +2
Query: 257 SSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG 436
SSAKDVAKQLKEQ MVMRGHR+NSMIHELNRYIPTAAAFGGLCIGALSV+ADFLGAIGSG
Sbjct: 385 SSAKDVAKQLKEQHMVMRGHRENSMIHELNRYIPTAAAFGGLCIGALSVMADFLGAIGSG 444
Query: 437 TGILLAVTIIYQYFEIFVKEQAEM 508
TGILLAVTIIYQYFEIFVKEQ+EM
Sbjct: 445 TGILLAVTIIYQYFEIFVKEQSEM 468
Score = 133 bits (321), Expect = 3e-31
Identities = 60/89 (67%), Positives = 66/89 (74%)
Frame = +3
Query: 3 NLYVISQMLAVKFSGNFLVNVLGVWADXXXXXXXXXXXXXXLCYYLSPPESLAHIAHDPV 182
NLYVISQMLAVKF GNF +N+LGVWAD LCYYLSPPES+ HI DP+
Sbjct: 300 NLYVISQMLAVKFQGNFFINLLGVWADVGGGGPARSYPIGGLCYYLSPPESVGHILTDPI 359
Query: 183 HALLYVLFMLGSCAFFSKTWIDVSAPRPK 269
HALLY++FMLGSCAFFSKTWIDVS K
Sbjct: 360 HALLYIVFMLGSCAFFSKTWIDVSGSSAK 388
>AE014134-1100|AAF52389.2| 476|Drosophila melanogaster CG9539-PA
protein.
Length = 476
Score = 167 bits (405), Expect = 2e-41
Identities = 80/84 (95%), Positives = 83/84 (98%)
Frame = +2
Query: 257 SSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG 436
SSAKDVAKQLKEQ MVMRGHR+NSMIHELNRYIPTAAAFGGLCIGALSV+ADFLGAIGSG
Sbjct: 385 SSAKDVAKQLKEQHMVMRGHRENSMIHELNRYIPTAAAFGGLCIGALSVMADFLGAIGSG 444
Query: 437 TGILLAVTIIYQYFEIFVKEQAEM 508
TGILLAVTIIYQYFEIFVKEQ+EM
Sbjct: 445 TGILLAVTIIYQYFEIFVKEQSEM 468
Score = 133 bits (321), Expect = 3e-31
Identities = 60/89 (67%), Positives = 66/89 (74%)
Frame = +3
Query: 3 NLYVISQMLAVKFSGNFLVNVLGVWADXXXXXXXXXXXXXXLCYYLSPPESLAHIAHDPV 182
NLYVISQMLAVKF GNF +N+LGVWAD LCYYLSPPES+ HI DP+
Sbjct: 300 NLYVISQMLAVKFQGNFFINLLGVWADVGGGGPARSYPIGGLCYYLSPPESVGHILTDPI 359
Query: 183 HALLYVLFMLGSCAFFSKTWIDVSAPRPK 269
HALLY++FMLGSCAFFSKTWIDVS K
Sbjct: 360 HALLYIVFMLGSCAFFSKTWIDVSGSSAK 388
>AB062670-1|BAB78518.1| 476|Drosophila melanogaster DSec61alpha
protein.
Length = 476
Score = 167 bits (405), Expect = 2e-41
Identities = 80/84 (95%), Positives = 83/84 (98%)
Frame = +2
Query: 257 SSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG 436
SSAKDVAKQLKEQ MVMRGHR+NSMIHELNRYIPTAAAFGGLCIGALSV+ADFLGAIGSG
Sbjct: 385 SSAKDVAKQLKEQHMVMRGHRENSMIHELNRYIPTAAAFGGLCIGALSVMADFLGAIGSG 444
Query: 437 TGILLAVTIIYQYFEIFVKEQAEM 508
TGILLAVTIIYQYFEIFVKEQ+EM
Sbjct: 445 TGILLAVTIIYQYFEIFVKEQSEM 468
Score = 133 bits (321), Expect = 3e-31
Identities = 60/89 (67%), Positives = 66/89 (74%)
Frame = +3
Query: 3 NLYVISQMLAVKFSGNFLVNVLGVWADXXXXXXXXXXXXXXLCYYLSPPESLAHIAHDPV 182
NLYVISQMLAVKF GNF +N+LGVWAD LCYYLSPPES+ HI DP+
Sbjct: 300 NLYVISQMLAVKFQGNFFINLLGVWADVGGGGPARSYPIGGLCYYLSPPESVGHILTDPI 359
Query: 183 HALLYVLFMLGSCAFFSKTWIDVSAPRPK 269
HALLY++FMLGSCAFFSKTWIDVS K
Sbjct: 360 HALLYIVFMLGSCAFFSKTWIDVSGSSAK 388
>Y08821-1|CAA70056.1| 479|Drosophila melanogaster ladybird early
homeodomain transcriptionfactor protein.
Length = 479
Score = 28.7 bits (61), Expect = 8.2
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = +1
Query: 325 LHDPRTEPLHPDGGRVR-RT----VHRGSVSAGRLPRGHRLRHWD 444
L P + P+ P GG ++ RT VH + +A LP G +R WD
Sbjct: 160 LAPPASRPIAPSGGLLQPRTEPLDVHPAAAAAMLLPSGQIVRPWD 204
>BT024396-1|ABC86458.1| 114|Drosophila melanogaster IP05150p
protein.
Length = 114
Score = 28.7 bits (61), Expect = 8.2
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +1
Query: 313 SPRQLHDPRTEPLHPDGGRVRRTVH-RGSVSAGRLPRGH-RLRHWDTARRHHHLPVLRDL 486
SP + + LH + +++H +G +AG + GH ++RH R LP+ R L
Sbjct: 19 SPTWIRAHLCDALHNRVPQEAQSLHEQGPGTAGHVQPGHLQVRH----SRRCWLPIERRL 74
Query: 487 CQGTSGDG 510
CQ +G G
Sbjct: 75 CQAANGPG 82
>AE014297-3010|AAF55896.1| 479|Drosophila melanogaster CG6545-PA
protein.
Length = 479
Score = 28.7 bits (61), Expect = 8.2
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = +1
Query: 325 LHDPRTEPLHPDGGRVR-RT----VHRGSVSAGRLPRGHRLRHWD 444
L P + P+ P GG ++ RT VH + +A LP G +R WD
Sbjct: 160 LAPPASRPIAPSGGLLQPRTEPLDVHPAAAAAMLLPSGQIVRPWD 204
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,874,636
Number of Sequences: 53049
Number of extensions: 564346
Number of successful extensions: 2108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2107
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3149551053
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -